Array 1 11736-8541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWL010000151.1 Plectonema cf. radiosum LEGE 06105 NODE_426_length_14970_cov_12.6529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11735 37 100.0 35 ..................................... TCGTAATCACAGTCAATCGTTGTGTCATCTAAAAA 11663 37 100.0 35 ..................................... GTGAATAGACTTTACGAATTGAATATTCATCAAAA 11591 37 100.0 34 ..................................... ATCATTACCGTCCATACGAATAACTGAAAGATTC 11520 37 100.0 34 ..................................... AAGAGATATATAACTTATATTTAATCTATTCTTA 11449 37 100.0 35 ..................................... TACTGACATCAACTTTTTCTTGTATTTTATTCAAT 11377 37 100.0 33 ..................................... TATTAATTCTATTACTAGAGCGATTGATTAAAT 11307 37 100.0 36 ..................................... TTGTCTGTCAAGTCGTTGTTATTGGTTAATAGGGCT 11234 37 100.0 36 ..................................... TTCACAATCACTTAAAAGTGAATCATTATTTTTTGT 11161 37 100.0 33 ..................................... GAAGAAATTGAAATTGATTTACCTGTGGTTGTA 11091 37 100.0 33 ..................................... AATCTAACTTCTTTAACTCTCCAAGCATTGTAA 11021 37 100.0 36 ..................................... GCCAATATCATCAAATGAAATCAATGTAATGATTGA 10948 37 100.0 37 ..................................... TTTCAGTTGCATTATCAATTCCACGAGCTAAAACAAA 10874 37 100.0 36 ..................................... TTTGATGTAAATCGGGGGTAATTTCTCTGACTAGTT 10801 37 100.0 36 ..................................... GTCTACTCCTAAATAGTATCGGGTACACCCGATATT 10728 37 100.0 37 ..................................... GGGCTTTGCCTTTTCGACGCTGTACGACAACACTAAG 10654 37 100.0 34 ..................................... TAATAATAGAAAGAAAGAAGGGCAGCGAGCTAAA 10583 37 100.0 34 ..................................... CAATACGACCATCAATAGTTAGGAACGACGACAA 10512 37 100.0 36 ..................................... TCGGGTATACCAAAGAACAAGCAGAGAAGTTACGCC 10439 37 100.0 34 ..................................... TACCTCCGATATTAATACACTACGTCTTCTAATT 10368 37 100.0 35 ..................................... TCTGAACTGATTAAGATGCTCAGGAATAGCAACCT 10296 37 100.0 36 ..................................... CAAGATTATTCTCACTTCTGTGTCCATCTCGCCTAA 10223 37 100.0 35 ..................................... AGGTATACCACGAAGTACAGCACATGGGAGGGTAA 10151 37 100.0 34 ..................................... ATTTTATTTTCAGCTTGCCGTGGGTCGAGTTCTT 10080 37 100.0 36 ..................................... ACCCTCGACTGTACCAAAACCCTCATCATCTTCTGA 10007 37 100.0 33 ..................................... ATCAGATTTTGATGATTCCGATAGAGAAATTTT 9937 37 100.0 33 ..................................... GGAACCGATGAATCTTGCTTACGATTCGGTTAG 9867 37 100.0 35 ..................................... TTTTGTAAGAAATTCCAATTGTTCTTTTTGGTAGT 9795 37 100.0 34 ..................................... TTCAAACCCAAGTGCCTTGCATACGCGCTTTGCA 9724 37 100.0 34 ..................................... TGACACTTAATATCAGGGTGCGAAAATCGCAACA 9653 37 100.0 34 ..................................... GTGGTTGTGTGAGGTACTCAGTAATTGCCGTGAT 9582 37 100.0 35 ..................................... CATCAACAATCAAATATACTTCATAAGCTAATCTA 9510 37 100.0 36 ..................................... AGCAGCATTAAATTTAAACATAGGTATAATTAGCGT 9437 37 100.0 34 ..................................... TAGAAATAGGCAAGTTTTTTAATCTCAGATTATT 9366 37 100.0 33 ..................................... CTCTAACAGCAGTGTTAGCATCGCAGACAGCAA 9296 37 100.0 34 ..................................... GTAAATGAAATAATAAAGCTCCACTACCTAAAAA 9225 37 100.0 35 ..................................... ATCTACAGTAATTTCTACATCTACCCCAGGTGTAG 9153 37 100.0 33 ..................................... GTGGTTTTAATTTCTGGTGCAAAGTTCGTGCTA 9083 37 100.0 38 ..................................... TTTCCCGGAAGCTTTATATAATGTTTCCCTGCTTTGAG 9008 37 91.9 33 ......................C.AC........... CTATTCGGTGCGTCCCTTTAACGCCAACCATAT C [8982] 8937 37 100.0 34 ..................................... TCAAATAGTTGTAACTGATGCCATTTCATAATTT 8866 37 100.0 35 ..................................... GAATAACCCTGAGAGATTTAACCGCATCCAAAATG 8794 37 91.9 35 ......................C.AC........... ACTATCCAGTCACCCATGAGACAATGAAACATATT C [8768] 8721 37 91.9 34 ......................C.AC........... ATCGACTACATCCAACATGAGATACCCTCCGACT C [8695] 8649 37 89.2 33 ......................C.AC..........G CTACTAGCCCAAAAGTATTAACACTCATGAATA C [8622] 8578 37 91.9 0 ......................C.AC........... | C [8552] ========== ====== ====== ====== ===================================== ====================================== ================== 45 37 99.0 35 GTTGAAATCCAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCCGCATACGCTCATCAATTGCAGCATGAAAACCCCACTAAATGTTTCTGGATGAAAATGCCAGTACATTACGTACATCATAAATATGGAATGTGGGAACATAACTTTGGTTTAGCTGTGGATTGGTGGGACCATGTTTTTGGTACTTATAAATCCGTAGAATGGCTGAGTGAGAAAGAAATGGCACTATCCGAGCGAGGTTATTTACAGTTGAAGTGGTGGTAATTTTTTGAAGTATTAAGTGAGTATTGGTGCGAACCTATGGGTGTTTTTTTTGAAGGGTCATTTTTGCAGGCTGAAACGATTACTGTATATGGGTTAGAAGGCTGTTTGTTCAAAAACGAGGTTCGCACCATTGCTGAAAGTGTTTGTATGACTGGATTTGATGGGTTTTCCCAAAAATGCCCCTTGACATACCAGTGGCTCAGACAGTATTTTATAAGAGGTTCGCACTTTTGTACCTTGAAAACTAAATATAGTAAGCTCTTTAGATGCTGGCA # Right flank : TTGACGCGGGAAGATTGTTTTACGGAAGCGCAAATACGAATTAAATGCGTAGCAGCTTAAACTAAAAAGTTAATTGCTTGTATCATTTAATTCTTTCCACTTTAACGTCTTGTCAGTGATAGCCGAGTACTACAGATTAGGGTGCGGAATGTAGGATAAATATGAAGTATGCTGTAGTTGTTGGTTGTTATTTTCTGGCGTTGCTGAAAAGATGTATGAAAATAATTTTGCGTGATTTTGAAATCCTTGGGAGAAGTGATATAATTACCTTCGGACACACTTAGGTAACAGGTCTCTACATTTAAAATTCATAGTTAGATTCAGCAACGCCTATTTTCCACTATCCACTATCAATTATTTAGCAATTCATCGCGCTTGCAAAACAACTAAGGTCATATCATCGCTGTTTTGTCTATCTGCACCGATGAATTGCTGAATTTGATTAAATAAACAGTCAAGAATTTCTTGTGGTTCTTTGTAATATTTACAAGCGTTGCTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCCAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 34324-36593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWL010000028.1 Plectonema cf. radiosum LEGE 06105 NODE_69_length_58319_cov_13.412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 34324 37 100.0 34 ..................................... AATCTGGTTTAGCCGCCAAAGTTGCCCAAGGTAA 34395 37 100.0 36 ..................................... AAAATACCCGCTAACTTTACCGAGTATAAAGGTCAT 34468 37 100.0 34 ..................................... TCTTGGAACGATATCGAAAATTGTGTAATGGTGA 34539 37 100.0 37 ..................................... CATGAAGATGTAGCTTTACAGTGAACCGAAAATAATT 34613 37 100.0 34 ..................................... CATTTGCGTGTGGGAGGATACCTCCTCCTAAAGA 34684 37 100.0 35 ..................................... TACTTATACTTGCAGTACCGCTGACGAGTCTACTA 34756 37 100.0 38 ..................................... GTTAGTTAACTTTAATTCTTGACTAATGTACTCCAAAA 34831 37 100.0 35 ..................................... CAAGATGGACGCTTTGAAAAACTAACTTACGATTT 34903 37 100.0 34 ..................................... TAAATCATAATCACTTAGATACCCCTGATTTATA 34974 37 100.0 34 ..................................... AACCTTTCCTTAACTTAAGCTTGAAACGTATATG 35045 37 100.0 36 ..................................... CTGTAAAGTTGAAAGTATCAGGACATAATCAAGATT 35118 37 100.0 34 ..................................... CAAACCGAAAAAAATTAAAATCGGACGTTTGCTT 35189 37 100.0 35 ..................................... TATCACGTTCTTTGAGTTGCTTGAGGATATCTTCG 35261 37 100.0 34 ..................................... GAGAAACAAATATCTATTGCTAAAAGTATTGTTA 35332 37 100.0 35 ..................................... CAACATATCTACAGGAAGTATTCCACCGATTAATC 35404 37 100.0 35 ..................................... CCTTTATCAGTGACCGCCCACAAGTTAATCCACTG 35476 37 100.0 36 ..................................... CAATGCATCTAATCACTAGCAAGCTTTTTTGGTCGC 35549 37 100.0 34 ..................................... TCGTCGATTTTAGCCAAGTAATCAGCGACGATTA 35620 37 100.0 37 ..................................... CCCGCAATAGAAAAATTACCTGATTGGATAAAATATA 35694 37 100.0 35 ..................................... AAACTCTCTTAAAATTAATTCAGACATTTGTTTAT 35766 37 100.0 33 ..................................... GATTTTAAGCTGTACCAGTGGTTAACTTTTTTC 35836 37 100.0 34 ..................................... TCAACTTTATATCGATAACGTTGCTCCTGTTTTT 35907 37 100.0 39 ..................................... ATTGAAACCGGTTTCACAAGCTTTTGTTTGAGCCGTGTA 35983 37 100.0 34 ..................................... TGAATAATCCACCACTACCTATCAAATTTTTGAA 36054 37 100.0 35 ..................................... GAGAATCACAGACGGTAAATTGATAATGTCTGCAT 36126 37 100.0 33 ..................................... GCTTACTTTCCACTTATTACCCCGTTCATCAGG 36196 37 100.0 37 ..................................... CATCCTTACTTTGAAGAATACATCAATATTCCTTTTG 36270 37 100.0 33 ..................................... GCTTACTTTCCACTTATTACCCCGTTCATCAGG 36340 37 100.0 37 ..................................... CATCCTTACTTTGAAGAATACATCAATATTCCTTTTG 36414 37 100.0 33 ..................................... TGCGAGAAACTTCCGACTTAGCGTAGTTTGCCT 36484 37 97.3 35 ....................................T CTATGTATTTGGGATGACGCGATCGCCTTACTCTT 36556 37 83.8 0 ......................CACC.A........G | C [36578] ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 99.4 35 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAGCGTCGTACTAAGATTCATCAGATTCTCAAATCCTATGGACAGTGGATGCAGTATTCGGTGTTTGAGTGCGATTTAACCGATACTCAGTATGCAAAATTGCGATCGCGTCTTTATAAATTGATTAAACCAGATGAAGATAGTGTGCGTTTTTACTTCCTTTGTGCCTGCTGTCAAGGTAAAGTAGAACGTATAGGTGGTGAAATACCACGAGACGATACTATATTTTTTGTTTGATTTTTGATGGTTTGGGTGCGAACCTGGGGGTGTAGAAAAAAGATGAGTGATTTTTGGGCTGGAATTGCTTGCTGGGTAAGTATTTGAGGGTTTTTTATGAGTTGGGAGTTCCGCACCGTGGCTGAAAGTCTTTCTGTAATTGGTTTTGAGCGATTTAATTCAATCTGCTCCTTGACAGGTCAGTGGTTGAAACACTATATTATTAAAGATTCGCACTTTTGCACCTTGAAAACTAAATATAGTAAGGCTTTCACATCTAGGTC # Right flank : GCTTTGTGACACCTAGGGTGTAGAATGTGGGTTAACTTATATCTTGTACTTTAGGCATAATTAACTACATGATAAAAAATATAAATAAAAATATAACTAACGTAAAGCTGTAATATTTTTAGTCAATTTTAATGGACTTCTGGTATCAGACTGGGACTTGCAGTCCCAGGCGGGTAAAAACGAAGTCAAACAATTAGTAATTATTTTGACGATAGCTTTCTATCCCTTTTCTGTCACTCTCCGGATTAAAGTAATAATAAATAAGCCAGTTTATCCAGAAGAATAAAATGGTTTACATTGATTGATTGCAGCAATTAAATGGTTAAATCCAAGCAACAAATTAGAATTTGGAAAAATATCTAGCCAAGGATAAATTAACCACAGGAGTAGGGTAGGTTGAATAATTAAACGAAGATTATTTAAAGTATTTTTCCATCCACCTTCAGAATTCCACTGTTGGTGGTGAGAAAAATCAGTAGAATGGTTGATAGTTTGATTTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //