Array 1 860441-863828 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJN01000001.1 Sulfolobus islandicus M.16.22 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 860441 25 100.0 42 ......................... TGTGACCATTTTTTTATCCCTATATTATACTATGTTTAAGTA 860508 25 100.0 37 ......................... AAATATCCTGAATCGGCATATTCGAAATTACACTGTT 860570 25 100.0 37 ......................... ATTATTCTAACTCCTTTCAATTCATTTTGAGATAATG 860632 25 100.0 39 ......................... TTTAGGTGCTTTCTCAGATGGTTGAGGTATGGATTCCTG 860696 25 100.0 38 ......................... TAAAAATATATGCCAATATCTTATATAATTCTACAATT 860759 25 100.0 35 ......................... TTATTCATTTCCGCCTTATTAGTAACGCCTACGCT 860819 25 100.0 37 ......................... TGCAGTTCTTCTAATTCTTTACATATTTTTTCCTCAG 860881 25 100.0 38 ......................... TACCCTACAGCGAATTCCACACTCTTTACTTTATGCCT 860944 25 100.0 40 ......................... TCATTTATCTCAATTTTTAGATGCAAATACGACCCATATT 861009 25 100.0 36 ......................... GGAATATATATGTGGGTATCGATATGAACCAGCCTG 861070 25 100.0 38 ......................... TTAACTATGATACATTCCCGTACCAGACCGCAACACTT 861133 25 100.0 38 ......................... TTTAAGAAGTCATAGTTACTTTGCCTTTGCAAGTCTAG 861196 25 100.0 39 ......................... CATATCTCTCATTCACTTTACGCAAAGTGAAAATTAAAT 861260 25 100.0 39 ......................... GAGTAGTAGCTATAAGCACTAAATTTTTTATTATATCTT 861324 25 100.0 40 ......................... AACACCAAAGTATTTAATTATATGGTTCTCTATCACGTTT 861389 25 100.0 40 ......................... AAACTGTAGATGAGAATGTTGCTAAAGATGTTAATATCTC 861454 25 100.0 36 ......................... TCTTCATCATAAAGATATAGCGGGTCATCACATTCT 861515 25 100.0 40 ......................... TTTTAAGTTACTTAACTCCTGGCTTATTTCACTCTCTTTC 861580 25 100.0 35 ......................... ATACCAGGATAACCGTAATATTGTGGGAACGATGT 861640 25 100.0 35 ......................... AACACTATTCTCTTCCTTACCTCTTTTACGTCCTC 861700 25 100.0 36 ......................... AAGTTAGCCGAGGTAGTGATTAGCCATGGATAGATT 861761 25 100.0 39 ......................... ATTTAAATTTCCAGTACCATAAGCAACTGCTTGTCTATT 861825 25 100.0 38 ......................... TAGTATTTATAGCTTCTTTTATCGTAAAAACACCTTTC 861888 25 100.0 40 ......................... GTATAGAACAACCACTGCCTAGCACTGTTTGGGTGTCCAT 861953 25 100.0 39 ......................... TTAAAATTAGATGATTTGTTAGGCATGTTTGGCTATCCT 862017 25 100.0 39 ......................... CCAATAAACCCCTACTGCTTACGTGGCTTAATACGTTAT 862081 25 100.0 42 ......................... TTATATCAATAATGATGGTCTTATCACTGCTGTTCTTCTTCC 862148 25 100.0 38 ......................... ACGAGTTTGTAGAGTTCAAACGTCTGGTTGAGTATGTT 862211 25 100.0 38 ......................... GATTTATCAAAAAGCGGAATAACGAAGACGCCAAATTC 862274 25 100.0 38 ......................... TTCAAAGCTCTAAGCAGGGAGTTAGCCAACGCCTTGTT 862337 25 100.0 41 ......................... ATTTATTATATATAACAATACTATATCCTGCGTCCTTTAGT 862403 25 100.0 39 ......................... ATAACAAATACAACTGTGCCTCCTACGCATACAGTTCAT 862467 25 100.0 39 ......................... TCATCCTCAAGAATCTTTAACTTCCCTTGCAGCAATCTT 862531 25 100.0 38 ......................... AAACCATCATTGTATGAATGACCAAATAGAATGTATAA 862594 25 100.0 39 ......................... GTTACATCGTTAGTATCTGAAAATTTCTTCTTTAACTTC 862658 25 100.0 39 ......................... TCTTTTTTCTCTAGTAATTCTATGATGTTTACGTCTCCA 862722 25 100.0 38 ......................... ACCTCATTATCATAAGTATTCTGAGCTAAGCTATTCAT 862785 25 100.0 38 ......................... TTTTCTATGAGAGAACCATTTAAGAACCTAGATTACGT 862848 25 100.0 38 ......................... AAAGAGTCTCTTCTCATCATTGATCCCCCTAGAACTTT 862911 25 100.0 40 ......................... TTCTCATATTGGACTAGGCTAATCTTCTGGGTTCTCTGCT 862976 25 100.0 38 ......................... ACCTCGGTGCGACATTGAAAACATAATCTTTGTTACTC 863039 25 100.0 36 ......................... ACAACTCTTTATTTATACCGTTAAACGCGAATTTGG 863100 25 100.0 38 ......................... GAGACTTCTACATCTTGTCCGCTCATCTGTGTTCTTTT 863163 25 100.0 38 ......................... AAATTATATGGCCTGAAGTGGGTGTTAAGTACGACAAT 863226 25 100.0 39 ......................... GAGGTTGGACGGCTAACGAATATCCCGCATTAGGCGGAT 863290 25 100.0 40 ......................... TTCAAACTCCGGGTCTGTCTCTTCGTAATTAATTTTCTTT 863355 25 100.0 36 ......................... TCTAATTTGAATGTTATAACCCTGTTCATAAGTATT 863416 25 100.0 44 ......................... GAACTATTGCACCTTTATAAGTATCCTCTTCTTCAGTTTTCTTA 863485 25 100.0 39 ......................... AATACATTAGCTATACTTGGATATCCAAGATTTATACCT 863549 25 100.0 40 ......................... CTTTTGCGTAATAAATTTATACGTCCAATCGGGCATTCTT 863614 25 100.0 39 ......................... AAGACTTCTTCAGTCATTATTTTTCACCTTAGCAAATTC 863678 25 100.0 36 ......................... CTAATCTAGCTTATTTGAACGCACTGGAAATATTCC 863739 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGATGATTACTAACCTAC 863804 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================ ================== 54 25 99.8 38 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGATGACTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCCCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAACAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGAACTCAACAGAAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATGTCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 885999-882043 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJN01000001.1 Sulfolobus islandicus M.16.22 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 885998 24 100.0 41 ........................ ATAATATCCCTTCTTCCTAATTGTAGCTACTACTTTAGCTC 885933 24 100.0 40 ........................ ACGAAACAATTTGATTTGTATACTGCAGTTGCAGATTATG 885869 24 100.0 40 ........................ GGGCTATAATCGGGTTTTCCACAATGTGCCATAGCAATTA 885805 24 100.0 41 ........................ ATACAACTATAGCGTCTCAAGTCTTTAATAATCAACAATTA 885740 24 100.0 39 ........................ CAACAATATCTTCAAGCACTCAATTCATTGGGCTCGTCA 885677 24 100.0 38 ........................ TCGCTACCGGTACTGTCTCTTTTGATAACTCGTCTCTT 885615 24 100.0 41 ........................ CTCCACTTAGCGATTGCTACTGGGAACCACGATGCCGTGGT 885550 24 100.0 39 ........................ TATTGATCTTCTTTCGTGCAATATCATAGTTAAAATTAT 885487 24 100.0 40 ........................ TTTTTGTTGCACCGATGGAATTTGAAATACATTCATTATT 885423 24 100.0 40 ........................ TTCAAGGAGATGGTTTTATGAAAATTGCCGATAAGGTCAA 885359 24 100.0 39 ........................ TAAAGCTTGTGACCCGCCTACAAGCTTAGCTGCATATGA 885296 24 100.0 38 ........................ ACAGTAGTAAAGTTCTGGAATTTTGTTGATGCTATAAG 885234 24 100.0 40 ........................ CTCCTACCCTGAGCCCTGATTCCGCCAACAATAAGAAGAA 885170 24 100.0 39 ........................ TCAACCTTTTGTAATCTTGTCATGTTGTTGTATACAAAT 885107 24 100.0 38 ........................ ACTTGGAGGCGGTGGAGATGGCGGAGGTGATATTATGG 885045 24 100.0 39 ........................ AAACTCTACTACATTAATTTCCGTCATTTTCTCACCTTT 884982 24 100.0 39 ........................ ATTACTAGGATATCCTTAGGGACAATTATCTTGATTGTT 884919 24 100.0 39 ........................ ACGCCTACTAGAATTCCCATTATAAAAGCAATCAAAAAG 884856 24 100.0 41 ........................ TTTTTGATTCACTCATGATTCATATATGAATCACAAATATT 884791 24 100.0 40 ........................ CATTCCCGTCGATTAACCTTAGCCAGAAACGGTAGTTCGG 884727 24 100.0 39 ........................ CGTGAATCTATCATTACAAATACGTCAGTTAGAATAATG 884664 24 100.0 42 ........................ GTCTTCTTTTTGCCCACTTTTTTTACTTCAAAGCCAACTTCC 884598 24 100.0 40 ........................ AATATTCCTTAAATAGTCTTGTTAAATCCATAAGGTTTTG 884534 24 100.0 41 ........................ AATACTTCATCAATAAGTAGACCACTATGGTCGAGTGGCGT 884469 24 100.0 39 ........................ AAAAATCGTTACAAGGGTGGGCGGATGGACGTCGTTAAA 884406 24 100.0 41 ........................ CATAATTACGGCATACGCGTATTTTTGATAAGCATTAGCCT 884341 24 100.0 36 ........................ GCTTATTAGCATCTCTTAACCATCTTATCAAACTCA 884281 24 100.0 39 ........................ ACATCAAAAAATAGATACCCCAATCCTACGGTGTATCTA 884218 24 100.0 40 ........................ CCTGCAGTTCCAGTCGCAAGAGTCTCTTCTACTACAACAT 884154 24 100.0 41 ........................ ACGCTAAGACCAGTTACAATTGCGAATAATGTAATTGTAGT 884089 24 100.0 40 ........................ TATACTTCGTTGTACAAGTAATTTTGCCCTGGCGATGAAG 884025 24 100.0 37 ........................ GCGAATAGAGCATTAGGGTTTTTGACAACGTAAGGTT 883964 24 100.0 39 ........................ TGTTGTTCTAAAAGTCTCCCTAAGATGTTATCGGCAAAT 883901 24 100.0 40 ........................ ATCAAGTTGCAAACTCATTGTTATTATCAAGTCCAAATGT 883837 24 100.0 40 ........................ AACAACGCTAAGGAAGCTATATTAATCACAGTAGGAATTA 883773 24 100.0 43 ........................ GATCGATCTAAAGTATTATGCAACATAAGAGCAGTAACATCTG 883706 24 100.0 38 ........................ TCTTTATACAAATTATACTCTTCAGACTGAAATAACGC 883644 24 100.0 40 ........................ CTAGGTAGGAAGTTGGCGGGCGTAATAATGATAAGATCGA 883580 24 100.0 37 ........................ TTCACGACCACGCTAACCGTCGCACTACCGCTACTAG 883519 24 100.0 40 ........................ CCAGCGTCTTTTACTTTCCACCAGCTTCCAATTGATTGAA 883455 24 100.0 40 ........................ GGCAACTTTGTATATGCTGCCACACCTGATCTAGAATAGG 883391 24 100.0 41 ........................ AACTTTATCGACCTTTTTTCTTATTTTTGTAATAAAAATTC 883326 24 100.0 41 ........................ ATGAATTGAATAAGAACGTAAAAATTAACGCCGTAAACCCT 883261 24 100.0 43 ........................ TGGGGAACACAACCGTTCGAATACAAGGGATTTTATGACACAG 883194 24 100.0 38 ........................ TTTTTCACTAATTCTTAAGAAAAGCGGAATGTCCCACA 883132 24 100.0 40 ........................ TTTAACTCTAGAATTCCTACACTCGTACTTACGTTTGTCT 883068 24 100.0 37 ........................ AAAGTACGCCGACCCGAACCTCAGGCTGGACGTAGAG 883007 24 100.0 39 ........................ TTAATTTCATCCTCTTTAGCTCTAATAGCCCATAAAATA 882944 24 100.0 41 ........................ AATAAGATATACAGTGTTGGGTAGAAGCCAAAGAAGCTGGT 882879 24 100.0 39 ........................ ACTATCAATCGTCAGCTTCTGTTCTTTCTGAATTTCTTC 882816 24 100.0 40 ........................ TCTGGGTAAACCTTTATTTCTCCCCGCCACTACTTTTTTA 882752 24 100.0 38 ........................ GATCTTTGGATGCCAAGTAATAAAAGGGCTGGTATCGA 882690 24 100.0 39 ........................ AATACAATAATCCTCCCTCGCCTTTTCATCCTTTTTCCA 882627 24 100.0 36 ........................ GTTATACCTCAGCACGCTGGAAGCTTGCAACTCCAT 882567 24 100.0 40 ........................ AATGGCGAAACTGACAATGAAGCAGAATGCTGTACTGTAT 882503 24 100.0 38 ........................ ATGTCAAAACAAAGTAATAATACTTGGGTAGCGACCAT 882441 24 100.0 39 ........................ TATTATAACTTATTACCATCTGAGAAGCACTAAATATTA 882378 24 100.0 37 ........................ TATACCTTCAATTAAATCGACAGTTGAAATGATTAAG 882317 24 100.0 38 ........................ TTAAACACGTATAAAGTCTCATGACTGTTACCAGTGCC 882255 24 100.0 39 ........................ GTCTTTATTAAAGTCCCTAGCTCTCTCCCTGCAGCTCCT 882192 24 100.0 39 ........................ TGGAATTATAAATGGCTCATCCTCGCAGGTGCGGACGAC 882129 24 95.8 39 ........T............... ATCATTATTATAGCCCCGCTATCGAAAGTAGCATTAGGT 882066 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== =========================================== ================== 63 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGCGTCATCTCTATATAAAGAGTAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGGAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATGGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 890595-893722 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJN01000001.1 Sulfolobus islandicus M.16.22 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 890595 24 100.0 38 ........................ GCTCAAATTGCCTATAGTTATGGGCTGAACGGGGTTAA 890657 24 100.0 40 ........................ ACTGAGAGATACGCATCTAACAACAACTCTTCTAACTTAT 890721 24 100.0 40 ........................ TATAAATATTTCTCTCTCACTAACGTGCTTTCGGATTTAA 890785 24 100.0 38 ........................ GGTATATCGCTGAGAATATCGTGGCGGATACTCAGACC 890847 24 100.0 39 ........................ ACTTCTACATCTTCGTGGAGACGCTGGACCCTGCATACC 890910 24 100.0 41 ........................ CCCCCCGTAGTCGCTCAGGACAACGATCTTCATTAACTTCA 890975 24 100.0 40 ........................ TAGTGGGGGTTCATCCCCCACACCCCCAATTCCATTTTTC 891039 24 100.0 37 ........................ TATTTTTCTAGCTTCTTCTTGAAGTCCTCAAACTCTA 891100 24 100.0 38 ........................ TGTCTTCCACTTCTACTTGTGTGCAATATTGATTTTAT 891162 24 100.0 41 ........................ ACACTAAGTGAACCCAGCTGTGATTCAAGTTCAATAGTACC 891227 24 100.0 38 ........................ CACCCGCAGCTGCAAGCACAACTAGCAACAAAACTAAG 891289 24 100.0 39 ........................ AGAAGATTAGCCTAATTTTAGCCTAATTTCTCATGGCCA 891352 24 100.0 43 ........................ TTTTATTTTTATAACATCAGCTTCTTCTTCTTCATCATACTCT 891419 24 100.0 37 ........................ ATATATATAACTAAGAATAACTTCATAGAATATCAAG 891480 24 100.0 39 ........................ TACGATATAGTTTACATATACGCTGACCTTAAATTGTAT 891543 24 95.8 40 .......................A TAGTTGAAGTACTTTCTATTCTTTTTACCGCTTGTCCAAA 891607 24 100.0 38 ........................ AAATACCCCAATTGTAATTGCCATTTGCTAAATTACAA 891669 24 100.0 41 ........................ TTTGAGTAGTTACAGCGTGAAAAGGTAAGGAATAAGGTATA 891734 24 100.0 37 ........................ ATCCCTTCATCGTAATAATAAATTATAAGATCGTCGA 891795 24 100.0 39 ........................ ATCGTGATCCCAGCGACGAAATACGGCTTCGTCTTCTCG 891858 24 100.0 36 ........................ CAAATATGTCATCAAGTATACTACGTAATTCATTTT 891918 24 100.0 39 ........................ TTTGAATTTTTCTCGCGAGGAATGATATCTGAACAGCTG 891981 24 100.0 41 ........................ AACGAATAAGAAGCGTTTAGCATAACATAATCGGCATTAAT 892046 24 100.0 42 ........................ GTAACGGAAAGGAGGGAGAGGAATCTACTCAACAAAACGAGA 892112 24 100.0 41 ........................ ACGGCACAGGTAATCTTAATAGATATACGATAGGATTAGGG 892177 24 100.0 42 ........................ ACTATATAAATTTGAAAACGGGAAAGAGAGAGAAAGATTTAT 892243 24 100.0 40 ........................ CTAATCCGTGTATCACCTGCAGGGTTTGGTGTCTCCCTGC 892307 24 100.0 39 ........................ GAATCTTGACCAAATGTTCCACTAGTCAGTAGTGGTGGT 892370 24 100.0 39 ........................ AGTTTGTTGAGTGAGTTTATGCACTGATCTACTGTAAGT 892433 24 100.0 40 ........................ CTGCAATCTTAGATTACATTAATAATCTCTTAAAAGAAAA 892497 24 100.0 39 ........................ GTTTCCAGTTCGATTAATGCCCTTGATTTAAGGTATTAT 892560 24 100.0 41 ........................ CTGTCCTTTACATATCTGTCTTAGGATTTCCATAGGTCCTT 892625 24 100.0 40 ........................ GCCGCTCGGAGCTCCCGTTACAAAAAGATCTATCAGTTTA 892689 24 100.0 39 ........................ ATATATAGTGATTTTAGGCTAGAGGGTGAAGGCGAATAT 892752 24 100.0 40 ........................ ATTCCCGTTAAGATTATACGCTCCTTATCCATACTCCTTC 892816 24 100.0 40 ........................ TTAATCAGCTTAGTAGTTCAAGACTTAGAAGAATAGCTCT 892880 24 100.0 39 ........................ TGTGACTTGATCTCCTCCAATAGTCTATACATATCGTCT 892943 24 100.0 37 ........................ ATCTAATAGATATTTAAGAGACACATTTTTCTTCCTC 893004 24 100.0 39 ........................ CACGTGGTCTGGAGGGTGTGTATCCAGCAATCATTCTTT 893067 24 100.0 43 ........................ AAGGTGACATTACCTCAACTAACATCTTAGAGCTACTAACACC 893134 24 100.0 38 ........................ ATGCGAATTTGGTTTGAAAAAACACTTTTGTTACCTTT 893196 24 100.0 38 ........................ TGAACTGGAGGATGAAATATATGAGCTAGATCATTATG 893258 24 100.0 42 ........................ AGGACGTAATTCTACAATTGTTCTAGTCACCCCTTGTGGCGG 893324 24 100.0 36 ........................ CTTGTAGACACGCTGGGACTCCCGCTGCTTGTAACA 893384 24 100.0 39 ........................ AAAAATGGTACGTGACGTGGGATTGAAAATGTATAAATG 893447 24 100.0 39 ........................ CCGTAGATGCTATGAGTGAAAGCACTGTGATTGCCGTAG 893510 24 100.0 39 ........................ TCCCCCCGTACCCCCTAGGGGTCTCTTCTTCTTTTTATA 893573 24 100.0 39 ........................ ATAAGTTGATCAGTATCCTTGTAACCACTATTTATCAAT 893636 24 100.0 39 ........................ CTGGTAATAGCGTGAACTGAATTCCATTTCTAGTTCCTA 893699 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== =========================================== ================== 50 24 99.8 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAAGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATAGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGACCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //