Array 1 1105709-1107081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056421.1 Citrobacter sp. RHBSTW-00524 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1105709 29 100.0 32 ............................. TTTTAATCGAGGGGCTTATTTTTGAAACAACT 1105770 29 100.0 32 ............................. GTAGTGTGTCTGTATGTTCACCGCGTTAGCGG 1105831 29 100.0 32 ............................. AAAATTACCAAGATATATTTTAAAAAAATATC 1105892 29 100.0 32 ............................. GCAATTGAATTTATTTCACTGTCTTGGCCTAT 1105953 29 100.0 32 ............................. TTGTTACGGTAATTTTGCCGGATAGGGAAAAT 1106014 29 100.0 32 ............................. GTTTAATGCGCGTTCGTGGGCTGACAAATCGA 1106075 29 100.0 32 ............................. ACTCATTCACTAATTTGCTGAGGGCTAAATAA 1106136 29 100.0 32 ............................. TTGTGGCATTGAAATATCCTGATGCCTGGTAT 1106197 29 100.0 32 ............................. GATACTGCCATGCTGGTGGCTGGCGATCTGAA 1106258 29 100.0 32 ............................. AAAAATCGGTGGAAGAGTTTGGCGCTCGTAAA 1106319 29 100.0 32 ............................. TTTTAACCCGCCCGTCGATAACGTCATGGCAC 1106380 29 100.0 32 ............................. GTTAAGCAGAAAGGCGCAATTAACCGCATCCC 1106441 29 100.0 33 ............................. GATTCAGCGTGAATCGGAATTGTCGGGGAAGGT 1106503 29 100.0 32 ............................. ACCCAGGGGGAATGGGAGCACTTGGCGGCTGA 1106564 29 100.0 32 ............................. GCAACTATCAGCGCCCTTTTTACGCCACGGAA 1106625 29 96.6 32 ............................C GGATATCCAACATCCTCGCTCCATTCGAATTC 1106686 29 100.0 32 ............................. TTCCCCTGCGCGAAAATAGTGAATCTCTGAAT 1106747 29 100.0 32 ............................. ACGTAAAAGCCAGCGATATTATTACTAATCAA 1106808 29 100.0 32 ............................. TATTAATACGTGCGCGTGTGGTTCGCGCTATT 1106869 29 100.0 32 ............................. AATGCGGAACGTGGTTTAATGCGCGTTCGTGG 1106930 29 100.0 32 ............................. ACCGGCGCGTTTTTTTGGGAGGAGCAACGCGA 1106991 29 100.0 33 ............................. GCGTTTTTTAATCACTTCGCCCGGTTGCAGATC 1107053 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCTGGCGAAATAGACCCTCCGCAGCCTGCGCCAGATATGCTGCCGCCTGCAATACCGGAACCGGAATTGTTTGGAGATGGTGGTCATAGGGGGCGTGGTGGATGAGTATGGTTGTCGTTGTAACGGAAAACGTTCCGCCGCGTCTGCGAGGGCGTCTCGCCGTCTGGCTGCTGGAAATTCGTGCGGGTGTTTACGTTGGTGATACCTCTAAGCGAATTCGGGAAATGATTTGGCACCAAATCATACAGTTGGGCGGAGCGGGAAACGTTGTGATGGCCTGGGCGACAAACACGGAGTCAGGTTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATTCCGGTAGATTTGGATGGACTTAGACTAGTGTCTTTTCTTCCTTTTGATAATCAATAGGTTGAGTGTTCTTTAATAAAACGGAATTGTTGTTCCCAAGTTGGTAGATTGTTACTTGATGAAAATTGCAATAGAAAACAGTTATATATATTTAGT # Right flank : GTGCACCAGCAATTCTTCCTGGCGTTCCGGCAGGTGTTCCGTAAGCGTGCAGTGAGAACCGTATTGACGAAGTGAAGCTGGTCAGGCAGGCAGAGTAACCCGCCACGGGAGCAGAGCACCCACCCGGTTCACAGGCCAGTCGGCGATGACATCAAGTACATAATGCAGATAGCGTTCCGGATCCACGCCGTTTAATTTGCACGTCCCGATAAGACTGTACAGTGACGCACCGCGCTCACCACCATGATCCGAGCCGAAGAACAGCCAGTTTTTTCTCCCCAGACTGACCCGTCGTAGGGCGTTTTCGGCAATGTTATTATCCACCTCCACCCAGCCATCTTCTGCATAGCGGATCAGCGCCGGCCACTGGTTCAGCGCATACCCGAACGCCTTCGCCAGTTCTGAGTGCCTTGAGAGGGTTTTCTGTTTCTCCCGCAGCCACCCCTCCAGTGACGCCAGCAGCGGCAGCACTTTTTGGTGCCGGACTGCCTGCCGTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1109559-1111234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056421.1 Citrobacter sp. RHBSTW-00524 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1109559 29 100.0 32 ............................. GGGCGGCGACTGGAAAACCCTGAGAGATGGGC 1109620 29 100.0 32 ............................. GCGGCGATAATGGCGGCGATAATGGATATATT 1109681 29 100.0 32 ............................. GGGATTTAAATAATGAAAATATAGATAGTGAC 1109742 29 100.0 32 ............................. TTTCTTTCTATACTGCATGTAAAGGAAAAATA 1109803 29 100.0 32 ............................. GCTCCGGTGATAATAGTAAAGATGATGATAAT 1109864 29 100.0 32 ............................. ACTAAATAGGTGCGCACAACAGGGATTACGCT 1109925 29 100.0 32 ............................. AAATTGACGGTGATCTAACTGTTACGGGTTTA 1109986 29 100.0 32 ............................. CGGTTATCCTGGCAATTCGAACGCTCTAATCC 1110047 29 100.0 32 ............................. CAATATAAATGCATAGTTTCGGAATTTTTATA 1110108 29 100.0 32 ............................. ACACATTAGAATGTGGCCGTTCTGCGTGGGAG 1110169 29 100.0 32 ............................. TTTTTACGGTAATTTTGCCGGATAGGGAAAAT 1110230 29 100.0 32 ............................. AGCCTAATTTCCCCGTTACAACATAAACAGCC 1110291 29 100.0 32 ............................. GTGCTGATACATTTGCTTCGTATAAAGGCTGT 1110352 29 100.0 32 ............................. AGCAGAACGCCTATATTTACCTCGGCGCGGAA 1110413 29 100.0 32 ............................. GATAAACAGGCGCGTGTTGCGCTGGCTGAGCA 1110474 29 100.0 32 ............................. CGCCATTAGTGACACTGCGTTAAACGTCGCCA 1110535 29 100.0 32 ............................. TTCGCGCCAGCGCGTGGAGTACCGCAGCAAAT 1110596 29 100.0 32 ............................. ACGGCGGACGCCCGTCAGGTGGAGGGCATGTT 1110657 29 100.0 32 ............................. TACCCCGAGCGCATCATCGAGGCTATCCAATA 1110718 29 100.0 32 ............................. ATCGCAAATTATGTTTACCACAATCCCCGCTC 1110779 29 100.0 32 ............................. TTCACCAACTTTAATTGGCTTGCATCGGAAAT 1110840 29 100.0 32 ............................. CCAGGCCAGGCAGCGCTACAGAGTCCATGCCC 1110901 29 100.0 32 ............................. CATGATGACCCCTCGCCAACGCAGAACACAAC 1110962 29 100.0 32 ............................. TCGTCATGAATCTGGCTAGTCGTGGCATTCAT 1111023 29 96.6 32 .....................G....... GCTATATCGATTATCTGGCGATGAATATGCTG 1111084 29 100.0 32 ............................. GACTGATGTTAAAAACTGGTTCCAGTCATTCA 1111145 29 96.6 32 ........T.................... ATACCAATGGTATCATGTAAAGCTATTTTTAT 1111206 29 93.1 0 .........................T..A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCCAGATTTTTGTGCCTGCGGGAAGATTTATCATACCGGCCCCCGCATCAGTTCGCGCAGGACAGTGCTCATGAGTTCAGCAGAGGGATGAGTCAGTGTTATTTCTCCTCCCCGACATTTTATGTGGCAGGTAGCGGGAGGAGAGCAGGATGGTAGTTCGAAGGTTGGGAGAGAAGAGCCCGCCTGAAGCTGCACGGGTATCAGGGCAGGAAGCGACGATGAGTTTTTTCGGGGCCGACAGACCCGCCCTTCACGCTGCCAGAGCCTTATCCATTTAAAGAGCAGGTTATCATTGACGTCATGTTTCCGGGCCAGTGCGGCAATACTGCCTTCTTCTTCAAGAGCCAGCCTGACCAGTTCCATTTTGAATTCAGGGGAATAGTGTTTCCGGGGAAGTCTTTCTTTAGCGCGCATGAGGTGTCCACCTGCAAAATAAGTGGGTGCTTAAGTTACAGGATCCTGGATTCGGGACCAGACGGTACTCAGACGACGCTTACG # Right flank : ACTTTGAAAGCAGAAATATTATGTGGCTGGATGGGTTACGAGGATTTTCCCGCTTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCACGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //