Array 1 7287-7427 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIW01000040.1 Lactobacillus crispatus strain UMB0085 .16933_8_53.40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ======================================= ================== 7287 22 100.0 36 ...................... AAAATTGTTGTTGTATCTAGTTTTGCATTGGGATCA 7345 22 100.0 39 ...................... TGACACTGTTGGTGTGGATGATCCAGGCTTAAGGGATCA 7406 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ======================================= ================== 3 22 100.0 38 CCTCCACACACGTGGAGAATAC # Left flank : CTGCATCAACGCCACTATCTATTTTTTTCAAAGCAAATAAAGCTAAATCATAATATTTACCAATTGGCTGATATTCTACAAAGGCGTGATCAATTAAATCAAAAATAAAAGAAATATAAGCGTTCTTGGTTAAATCATTATATAAGCCATCAAACTGCCTTGCCTCTTTATATGTGCGTAAATTACTTAAGCCCTTTCCGCTCGTATAAATTACGTAAGTACCAATAGAAAAATTTAATGTTGCTGCACTTAATCGTGATTTAGGCTTCAGGGCTCCTTTAACAATCAGAGTCATAATTCCATCTTGTTTAGTCATAATTTTGGCTAATAAATCTGCTTCTTTATATTTCTGCCTTTTAAAGATAATACCCTGAACTTCTTTTAGTTCACGTGCCATATCATGACTCCTTTAGTATTTAAAATTAATTTTTTATAGATATTCTGATGAAGATATCATAATATCATAAATAGTCTATAGTACAAAAAGACTGCTGTTTCAG # Right flank : CAGTAAACAGATCCCAATATAACAACAATCACAAAACAATAGATCCCAAAATTTCATCACTTTGTCAATTACTATTGTATCTATTTCTGTCTCATTAGTCATCCAACGAATAGAATTTTCTTGTCTCCCTAAACATACAAAAAAGACGTCATCTTTCGACAACGCTTATACAACAGTAATTCAACTAAAGTTCTTTTTTGTCATAGCCTATTCGCTTTAAAAAGTTAGGGTCAGAACGCCAGTTATGTTGGACCTTAACCCAAAGACGCAAGTTGACCTTTTCACCAAGCAATCTTTCAATCTCTTGACGTGAATTAATCCCAATCTGCTTGAGCATCTTACCGCCCTTACCAATAATAATGCCTTTTTGACCGTCTTTCTCAACATAGATAGTCGCTTCAATCAAGAGCTTGCCATTTTGATGAGTATTCATATGATCAACTGCGACAGCAGTAGCATGTGGTACTTCTTGTGAAGTCAGTCGCAGAATTTGTTCACGA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCACACACGTGGAGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 12203-11970 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIW01000040.1 Lactobacillus crispatus strain UMB0085 .16933_8_53.40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12202 36 100.0 30 .................................... AGACAGGCAAGAACACAGCCCAGACATTCA 12136 36 100.0 30 .................................... CTAAGTCCTTGCGCACGATCATGTCAAAGA 12070 36 100.0 30 .................................... CCACTATCGCGCCTGGAATACCTGTTTTCT 12004 35 83.3 0 ......................-..G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : AATGACAATATTATGGCAAAGTATATGAATGTCATTATTAAGAACTTTATTTCTAACTTGGATGAGGTAAACAGAAATAGAATTTTAAAATCTTTTTATTCATTAGAAACAGTATTGAATGATTCTTTGCTTTTGGAAGATTTACCTTTAGAAATTGATTTTAGCGAAGATATTAAAAAGTTGTTGAAAATGGTTAACATTCATTTAGATGCTCAATTAATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGCAATATGGGGTAGCAGTCAAGGATGCCCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCG # Right flank : AGTAATCTGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTTGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATGCCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCCAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGACACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //