Array 1 316156-317770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAV010000003.1 Salmonella enterica strain 152 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316156 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316217 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316278 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316339 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316400 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316461 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316522 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316583 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 316644 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 316705 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 316766 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316827 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 316888 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 316949 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317010 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317071 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317132 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317193 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317255 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317316 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317377 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317438 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317499 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317560 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317621 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317682 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 317743 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 333903-335379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAV010000003.1 Salmonella enterica strain 152 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 333903 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 333964 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334026 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334087 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334148 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334209 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334270 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334331 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334392 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334453 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334514 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334575 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334636 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334698 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 334759 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [334801] 334801 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 334862 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 334923 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 334984 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335045 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335106 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335167 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335228 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335289 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335350 29 96.6 0 A............................ | A [335376] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //