Array 1 90-1474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDA010000026.1 Bifidobacterium longum strain 1001254J_160919_E2 NODE_26_length_23542_cov_66.0337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 90 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 154 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 218 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 282 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 346 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 410 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 474 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 539 36 97.2 28 ..........................G......... TCCATGACCGCGTCCATCACCTCATGCC 603 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 667 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 732 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 796 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 860 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 924 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 989 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 1054 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 1118 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 1183 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 1247 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 1311 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1375 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 1439 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 99.2 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CTACCTGACCTGCGGCAAACTCGACCTCAGCACCGTCACCACCTGACAGACCCACCCACACCAAACAGCGAAAGGCCATAGTTTTCAATC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 204-1138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDA010000055.1 Bifidobacterium longum strain 1001254J_160919_E2 NODE_56_length_1239_cov_48.4656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 204 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 269 36 100.0 28 .................................... CAACACGTACAATCCGCAGGGCGTCGGC 333 36 100.0 28 .................................... TATTGATACGTATGCGCTCGATGCTGAT 397 36 100.0 28 .................................... TTGAGGTCAATGCACAGACCGCAACCAG 461 36 100.0 28 .................................... CAACTGATAAAGCGAAAACCGCAATACA 525 36 100.0 28 .................................... GTTCGTCCGACGGTGTGCGTCCCGCGCG 589 36 100.0 28 .................................... GCTAAGTATTGCTTAACAGATTGATATA 653 36 100.0 28 .................................... GTGAGCATTGCGGTGTTTGGGTTGCGCA 717 36 100.0 28 .................................... GAATCTGGCGCAACATGTCGCGCGCGTC 781 36 100.0 29 .................................... GAAGAATCCGTGTAGAACTTGGCCTTGTA 846 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 910 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 975 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 1039 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1103 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 15 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GAAAATCGTACACAGGACACGGGCCATGTCTCTATCTCAGGCCCTCAACCAATTTGCGCAAAATCTCGGGCGTTATCGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTATC # Right flank : GTTGTAATCGGTCATAATAGTTTTGGCCTTTCGCTGTTTGGTGTGGGTGAGTGGGTCGGGGGGTGGTGGTGCTGGTCGGGTAGTTTGGGGGGTATGGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //