Array 1 1020065-1022223 **** Predicted by CRISPRDetect 2.4 *** >NC_020834.2 Mannheimia haemolytica USDA-ARS-USMARC-185, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1020065 32 100.0 34 ................................ GTCAATTTCAGCAATTCGCCCACGGCAGACTAAC 1020131 32 100.0 34 ................................ CTAACAAGGCTTAGGCTTTACTGATTTTTTAAAA 1020197 32 100.0 34 ................................ TAAATCTACCAATTGATCGTAAAAGTCCGTATTT 1020263 32 100.0 36 ................................ GGCAAGGTCGAGTTTCATTTGGTTGGAGATACTAAC 1020331 32 100.0 36 ................................ CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 1020399 32 100.0 35 ................................ GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 1020466 32 100.0 34 ................................ CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 1020532 32 100.0 36 ................................ TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 1020600 32 100.0 35 ................................ ACATCCCGAGCCAAACGGCAAGCCTATATTATCTG 1020667 32 96.9 35 T............................... AATTAACAAAATGGATGAAATATGAAAATCACAAA 1020734 32 96.9 34 T............................... CAGCAGTCTGTGCGAACAGCTCAAATCATTAAAG 1020800 32 96.9 33 A............................... TTCTTATTTTTTGTATTTTTTAGATTTTTATTA 1020865 32 96.9 33 A............................... AACTAGTACATAAAATGCCCACGATAACAACAT 1020930 32 96.9 34 A............................... CAGCAGTCTGTGCGAACAGCTCAAATCATTAAAG 1020996 32 96.9 34 A............................... GGTGACGGTTCGCCCAAAGCCAAGCAAAGATAAT 1021062 32 96.9 33 G............................... TCTTCAATCACCGGTTTAGGTGGTGGAATTTGC 1021127 32 96.9 34 T............................... ACCGCCTCACGAATTTGGCTTGTGATGTCGGTAG 1021193 32 100.0 32 ................................ CGTGCGATTCCGATTTGGACCGGCACGGAAGT 1021257 32 100.0 34 ................................ ACCGCCTCACGAATTTGGCTTGTGATGTCGGTAG 1021323 32 100.0 32 ................................ CGTGCGATTCCGATTTGGACCGGCACGGAAGT 1021387 32 100.0 34 ................................ GTTTGCGAAGATGACGGCATCGAGCAAGAAACTA 1021453 32 96.9 34 T............................... CACGCAAGGGTTTTGAAGCTATCGGTATTCCTAA 1021519 32 96.9 35 G............................... GTCTATTAATGCCGGTTTAACCAGTCTGAAAGAAC 1021586 32 96.9 36 G............................... TGCCATATCAAGATAAGCTGATAATCCCCCAGCTAA 1021654 32 96.9 36 G............................... AATTGTACCTGTTGCAATTAAATCCCCATTAATCGC 1021722 32 93.8 35 G....................T.......... TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 1021789 32 93.8 34 G....................T.......... TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 1021855 32 93.8 35 G....................T.......... CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 1021922 32 93.8 35 G....................T.......... CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 1021989 32 93.8 37 G....................T.......... AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 1022058 32 93.8 35 G....................T.......... TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 1022125 32 93.8 35 G....................T.......... CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 1022192 32 87.5 0 G.........T..........T.T........ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 97.2 34 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //