Array 1 49-1052 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISD01000364.1 Escherichia coli strain SL3 SL3_S3__paired__contig_364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 96.6 32 .T........................... AACGTGAGATACGCCTCCCCGCGGCGCTCGGT 110 29 100.0 32 ............................. CCGGCAAACAGTATCACCGCGTTAACGCTCGC 171 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 232 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 293 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 354 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 415 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 476 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 537 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 598 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 659 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 720 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 781 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 842 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 903 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 964 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1025 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGGATGGCCTTGGCAGCGTCTTTCCGGTCATTCAG # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8702-10682 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISD01000176.1 Escherichia coli strain SL3 SL3_S3__paired__contig_176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8702 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 8763 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 8824 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 8885 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 8946 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 9007 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 9068 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 9129 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 9190 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 9251 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 9312 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 9373 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9434 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 9495 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 9556 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 9617 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9678 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 9739 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 9800 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 9861 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 9922 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 9983 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10044 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 10105 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 10166 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10227 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10288 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 10349 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10410 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10471 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10532 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 10593 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 10654 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //