Array 1 242542-241371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEF010000001.1 Salmonella enterica isolate 3276_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242541 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242480 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 242419 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242358 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242297 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242236 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242175 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242114 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242052 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241949 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241888 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241827 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241766 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241705 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241644 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241583 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241522 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241461 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241400 29 96.6 0 A............................ | A [241373] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260716-258674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEF010000001.1 Salmonella enterica isolate 3276_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260715 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260654 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260593 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260532 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260471 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260410 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260349 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260288 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260227 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260166 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260105 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260044 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259983 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259922 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259861 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259800 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259739 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259678 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259617 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259556 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259495 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259434 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259373 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259312 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259251 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259189 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259128 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259067 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259006 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258945 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258884 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258823 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258762 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258701 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //