Array 1 75939-75774 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904197.1 Streptococcus didelphis DSM 15616 A3GUDRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75938 32 81.2 36 NNNNNN.......................... TTCGACTAGTTTTTTAAAGTTGTCAAACTCAAGATT 75870 32 100.0 33 ................................ GTTAAGTATCAGCTTGTCATCAATTTCCTTGGA 75805 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 93.7 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGAAATTCGCAACAGAAGACATGTTTACTTAATTAACGTCTCACCCTTCAGGGGTGCGCTTGTGAACTTGTTTTGCTTATGTAACAACCCTACATTTTAGTGATACTTTCTATCTAGCTGAAACTTGCATAAGTGCTGTTTTCATCAAATTTCCAGGAGTCCATTTCTGTTATTTTTCGCTTCTCATGATATACTATTCTTAGAGTATTTAGTGTCAGAAATGGGGAGTAATATGGGGAAAGTGTCTTATGGGATAGTGTCGACAGCGCAGGTCGCACCACGGTTTATTGAAGGTGTTCGTCTAGCGGGGAATGGCGAAATTGTGGCTGTTTCCAGTCGTTCTTTAGAGACGGCTAAATCTTTCGCAGAGACCCACAATATTCCCCAGGCTTATGCTAGCTTGTCTTCTATGTTGGCTAACCCTTCTATTGATGTCATCTACATCCCAACGATTAATAAAGATCACTACAAGTGTGCTAAGAAGGCTTTATTAGCTAGA # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 76886-76454 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904197.1 Streptococcus didelphis DSM 15616 A3GUDRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 76885 32 100.0 33 ................................ CTTTGGCATCTCCTGTGTCTCCCTTAGGACCTT 76820 32 100.0 34 ................................ CTTTTCGGTTTGCACAGCTCCAACAACATCTCCA 76754 32 100.0 34 ................................ TGGTTGTAAGTCTAGCAACTCTTCTTTTGATTTA 76688 32 100.0 36 ................................ CAATTGAGCATATGGCAGCAGCGTTAGGTCACTCAA 76620 32 100.0 35 ................................ CCTGATTTGAGAATGATATATGTCAATGCTGATTT 76553 32 100.0 36 ................................ GGCGATTGTCCCGCTCGAGCCCTTAAACTCATACTT 76485 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGACTTAGAAAGTTATCCACCTTTTATGATTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCTGCTGGCAGAAAAAGATTACGCCATGTTGCCAAACTCTGTGTGAATTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACGCCTGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGATAGCTATGACCCAGATAAGGGTGTCTTATTATTGTAAAAAAGTTTAGTACGATCCGAGGTTTCACAGGAAAACCTGGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATGAAAAGACTTAAAACGCCTCTATATTTTCCAACCGTTTCTATATAAACTGTGTCATTTGGCGCA # Right flank : TGAGAGCTGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //