Array 1 9754-10580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000192.1 Nostoc sp. UCD121 NODE_192_length_14986_cov_10.2097_ID_383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9754 37 100.0 35 ..................................... GTTAAACTACCACCCCTTACTTAGTTGAAAATATA 9826 37 100.0 35 ..................................... TTGTTTATCCCTGATTGATGAGTGTAGCTCATCAA 9898 37 100.0 34 ..................................... TACAAATCACGAAACGTAGACATCATCAATAACA 9969 37 100.0 35 ..................................... CGGCAAAAAGGATATCCCCGTTATTAAAAACAAAA 10041 37 97.3 33 ....................................G TCTAAATTTACTACTCATTCTTTTACTTTTCCT 10111 37 100.0 35 ..................................... TTAGATTTATCTGCTGAAAAAGCTGATTTATTAAG 10183 37 100.0 34 ..................................... AGAGGATTTTTTGGTTAGTCATCCCCGTATAAAC 10254 37 100.0 36 ..................................... GAGAAATACATCTTCTTGGAGATTGCGTAATCGTAG 10327 37 100.0 35 ..................................... GTATTAATTCCTGATTGATGCGTGTAGCTCATCAA 10399 37 100.0 36 ..................................... ATTGAGTTATCTAATGACTGCATTGAAAACAATAGA 10472 37 100.0 35 ..................................... GCAGAAAAAACTAGGGTATCCTGCATCTAAATATG 10544 37 86.5 0 ....T......TT..C....................T | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 98.6 35 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : AGAAGGTGTGGTGCATTATGGCGTACCTAATATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAATTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCGAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCTGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTGTGTAAGGATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGTCACTAGTAAATTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCCTCTAGCCAAATCACAATTTATTGTGTTATCATTTCAGCATTCGCGCAACTGAACCTTGAAAACCAAATAAGACAAAGCTTTCAGAAGCCAGCCA # Right flank : TAATCGCCTCACTTTATCAATCGGCTATTGCAGATGTTAATGCTGCATTAAGGCAGTGGTAATATCAATTTTTTAAAGCATCACCAAACTACCTTCTGCTTCTTCTTCTAGTTCATAACCATTAGCCAGTTTTTCAATTGCTTGGTCAAGCATTGCCAAACCTTGATCTACCTTTTCAACTAAACTTAGTTGTCCTCGGAGTTCGGCAGCACCGACGAAACCTTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGGACACCGCGATCGCCTTTATATTCCCACAAGGCTTGTAAATGATCTCTCGCACATTCCAAACGCTGAATCGGAGTAGGTGTCGGTAATATTTCCCCAGTTTTCAGGAAGTGATCGATTTCTCCAACCAAAAACGGATAACCCAAAGTCCCACGGGAACACATCACACCATCAGCACCAGTTTGTTCTAAACATTTCACCGCCGCTTCAACGGAAAAAATATCTCCATTCCCAATTACTGGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 8692-8896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000223.1 Nostoc sp. UCD121 NODE_223_length_12024_cov_9.92408_ID_445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 8692 25 100.0 35 ......................... CCCAGCATCTTACGGTAACGTTATTCCAGCCAGTC 8752 25 100.0 35 ......................... TATATCGTCTTACGGCAACGTTCGCCCAGCTAGCG 8812 25 96.0 35 .......T................. CACAGGGGAGTTTGGTGATGTCCGTCCAGCCAGCG 8872 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================== ================== 4 25 99.0 35 AAGACCCCTACGGCGACCCCGCAGA # Left flank : TTGGGTACAGGACAAAAAGTTGCACTTTTGGCGGGTGCTGCTGCACTTTACTATATGTACAACCAGCATAAGAATGCTCCCCAAGAAGGAGCGCAAGGTAAGTACTATCTTTCCAAAAACGGGCGTGTATACTACCGCGATGCTGAACATCGCGCTCACTGGGTTACTCCACCAGCAGAAGGAATTCGAGTACCAGAATCTGAAGCACAAAAATATCGGGAATTCCAAGGCTATAACCGGAGTGCCACAGGTCGCGATCTAACTGGTATAACTTCATCCGCAGCACCAGCACTCTAGATCGGCGAAGCGTGTGTAAATAAGAAAGCGGGTTTCCCAGAGGATAACGCCATCGCGCACGTCGGAAACACGAACTTAAATCAGGAGACAGATTATGGTAGATGAATTTTTCCGAAAGGCGAAGGAGTTGCTTTTGGGATCAAACAGCGATCAAGCTGAGAGAGATGCCGAATTCCGCGATCGCGATGTCCGTCCAGCCAGCG # Right flank : ATGAGGATTACCGTCGTTAACGCCAACGGCACAAATATTCTGGTGAGTTTGAAAAACCTCTCCCTGCCTTGAACTTTAGTTCAAGTCTGTCCCTCTCCGACTCGGAGAGGGACAGTTTTATGTAGTTATAGATCACAAAGACGCGATAAATCGCCGTCTTTTCCCTTAACCGAACCGTATTGCACTATATGAGCCATCGAACTCATGTTGGATTATGGATTATTTTTGTTAGCCAAAATTTCCTGCGATCGCTCAATATTTTGACGCACAGATTGAGCCGAAGTATGCAAACCCTTTCTTTCTTCATCGCTGAGTGTCAATTCCAATACACTCTCAATTCCACCGCATCCCAACCGACAAGGAACACCAATTACAACATCTTCTAAACCGTATTCACCTTGCAGATATGCTGCTACAGGCAACAACCGCGACTGATTTAATAAAATCGATTCTACCATTACGCTAGTAGCCGATGCTGGAGCAAAAAAAGCACCACCCGT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGACCCCTACGGCGACCCCGCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 1976-2390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000249.1 Nostoc sp. UCD121 NODE_251_length_10259_cov_7.63701_ID_501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 1976 38 100.0 36 ...................................... ATCAAATGCTGACCTGGGTAAAATCGCTTTATTGGC 2050 38 100.0 38 ...................................... TCTAGCAAAATACTCACAAGCAGCAGGACTAGAACCAG 2126 38 100.0 42 ...................................... ATATCTATACAAATTGATCTGATATAGCTAGGGACTGCCAGT 2206 38 97.4 36 A..................................... GTGGTTCTGGTGGTATATCAGGCTGTTCCCCCAGTG 2280 38 100.0 35 ...................................... CGGCGTTCAGCCTACAACAGATTTAATTGAGGAAG 2353 38 94.7 0 A....................................G | ========== ====== ====== ====== ====================================== ========================================== ================== 6 38 98.7 38 GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TTTTATTTAATAATTTACGATCTGCCTGATAACAAAGCTGCAAATAAACGTCGTACTCGCCTACATAAAATGTTATCTGGTTACGGAAAATGGACGCAATACAGCGTTTTTGAGTGTTTTTTAACAGCAGTACAATTTGCTACGCTCCAAACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCGGTTCGATTGTATATACTTGATGCAGGTGCAATTAAACGAACAATTACATACGGGTCTGAAATTCCTCGACAAGAGGAAACAATAGTCTTATGATTATGTAATCAGCTTGATGATTGGCAAGCCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTCAGTAATCGAGAAAGTTGCAAATTAGTTGCAATAAGCCAGGCTGAAAATGACCTTTTTTTTCGATCTGCCAAAAGCATTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGACCGAGC # Right flank : GATTGAATCATAAAGTCAAAGAGGATGGAAATTGCGTACAATATTGAGCATTATTTTAAAGCCATTAGTAATGCCAAGAGCAGCTACATCTACTAGTCGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTGACATGGGCAGATGAAACAGAATTGGTGGGATTAGTGTTTGAACTGGAGTCAAGTGCTTCTGCTTTGCTTTATTCGCAGTACACGATTGGGCTGCACGCATGGCTTCTGGAGCAGGTAAGACAATTCGACCCAGACCTTTCAGCTTATCTTCATGATGGAGAGTCAGAAAAACCCTTTAATATTTCAGCGCTGTCGGGTCAACTAGTTGCTAGTGGCAAACAACTACGATTAGAAGCGAATCAAATTTACTACTGGCACGTGAACGCTTTATCTCAACGGGTAGCACAGTTTCTCAAACACTGGTTAACTCAACTACCAGAAAGGTTAGATTTAAAAGGTGCATCTCTAGAGATAAAACAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 4577-3873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000249.1 Nostoc sp. UCD121 NODE_251_length_10259_cov_7.63701_ID_501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4576 37 100.0 42 ..................................... CCCTATCTACTTGTAGAGTTTTCCACAATCTTCCAAATGTCG 4497 37 100.0 35 ..................................... GAAATACTAAAAAGAGCTTTAAACGATGGATTGAT 4425 37 100.0 38 ..................................... CAATGGTGGGCACACAATGTTAGCGCTTCATGATGCGT 4350 37 100.0 36 ..................................... TGTTCAAGCAATCCAGCCTAAAGTTGCACGGAACAT 4277 37 100.0 35 ..................................... TTTAGGCGTTAGCCTCATTCCCTACCCATTAGGAA 4205 37 100.0 35 ..................................... ATTCACTAGCCTTTGCCATTTTAAAGCAGTAATTG 4133 37 100.0 35 ..................................... GGCTATTCTGAACAACCAGCAGAATGCGATCGCAG 4061 37 100.0 43 ..................................... CTTAACCAAGATTTGATCGAAAGTTCATTCAATCAATAAATAT 3981 37 100.0 35 ..................................... CCAGACAACTTTAATGAATGGGAATTTTTACAAGA 3909 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 100.0 37 GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Left flank : TAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAATCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAATATTTTTTTGGCGTGTCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAACTTTGAAACCCTTGTGATGTCTTAATTTCAGAGACTAGTGTGCCAATTGATTTAGTTTTTTGATGCGAGACGAAAGAAGCTTTTTAAGGGATATGCCAAATTTGTATCTGAAAAGCTTTATTTGCAAGGGGTCTAGACGGCAAGGTTTCAACCACCATTCCGGCTAGGGGTGGTGTACATTCGTAATCCACCACAG # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAGGCTTTTTGGCAGATCGGAAAAAAAGGTCATTTTCAGCCGTCCTTATTGCAAATTATTTGCAGCTTCCTCAATTATTGAAACGCTGTAATTATTTAATTGTCTAGGTTCTGGCGATTTTGGCAGAACCCCCAGGTTTTTGACCCCGCTTCGATTTGCCAAACATCAATTTGATAACCCAATCATAAAACAATTACTTATCCTTGTCCACAAGCAAAGGTTTTCAACTATTATTTTCTTGTTTTAGGGATTTTCTGGCTAATTTCACGTAAGTTTTCACAGTCGAGATCGGCATCTCTAAATCTTCGGCGATTACCTTCAATGATTCCCCCATCTCCCGCCGCGCCAAAATCGTTGCCCAGGTAACAGCAATTTTATCTGTTCGCTCTCCTCCTGTCCGTTTGCGTTGTGCAGTAAATAATTTTATCAGTTCCTCAATTCGCTCTCCCAGCAGATTTGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1152-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1151 37 94.6 33 .....A...............A............... ATAGAAATCATCCCGCCATAAGTCCCTAGCATC 1081 37 94.6 36 .....A...............A............... CATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAG 1008 37 94.6 34 .....A...............A............... AAGCTATATACCAATAATCACTTACACCCTGATT 937 37 94.6 40 .....A...............A............... TCTTTTTGCTTGTAACCCCATGCCACGAATGAAGCCCAAG 860 37 100.0 33 ..................................... TCTGAGAGTCTATCAGTTCGTCTGTCATTACTT 790 37 100.0 38 ..................................... TTGAATAAACTCAATTTTGCTCATGAATCCAGCCTCAA 715 37 100.0 35 ..................................... CAAGCAATTAACCCCAGAAGAAGCAGAAATTACGC 643 37 100.0 37 ..................................... GCGTTGACTCCCAACACTCCCACCCATGATGCATCTG 569 37 100.0 39 ..................................... ACCTCAATAAAACCTCTTTCTGCTTGCTCTGTGAAATCA 493 37 97.3 36 ................................A.... GCAGATGGGTAGGCGATACAAGCTAGTGAACATACA 420 37 94.6 0 ...............................T....A | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.3 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Left flank : ACACCCTTTGCACCATAATTTTTGTACATGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACTGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAAGTCGCTTCTCTTCGGAGAATTGGAATTAATGGAAAGAATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTT # Right flank : AGAATCAGAAATTTGGTGGCGCGATGGGAAATAGATTTAGTTCACGCCATCTTTATTCCAATTAATCAAAAAAATAAGCTAAATAATTAAATTAAAACCCATCTTCACCTACTCCGATTTATTCCTCTTTTTGAACCAGCAATTTCCCAGACACCCCAGCTGTAAAACCCAACCCAATCGCCGCTACAGTAACGCTGGGCTTAATAAATAACGTCGCAATTCCGATAACTGCGCCCCAAAGACAGCCATAACAGCAAACTATAATCAACTGATTTTTGGGTTTAGCCCTTTCGTCTGATATAGATTGATGGACTATGGCATAATCTTCGAGTTCACCAACGATTTCTGATAAAGAAGCGCCGTACTCTTTTTCCAATCTACAAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : GTCTCAACTAACTATGTGGAGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1843-1437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1842 36 100.0 37 .................................... TGCCTTTTTCAATAAATTCAGGTTCATATAATTTATT 1769 36 100.0 34 .................................... CCTACCCTCAAATAACCAACCAAACAATCCTTTA 1699 36 100.0 41 .................................... TCGCAAAGCCTAACACCCTTTGCACCATAATTTTTGTACAT 1622 36 100.0 38 .................................... GTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACT 1548 36 100.0 40 .................................... GTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAA 1472 36 91.7 0 ............C......T...............G | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 38 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : CGATGCTGTAGTATTTGCGATCGCAGTTCCACGTTCACGTCATCAAGAGTTTAAGCATGAAAAGGTTGAGCCAATTGCCGGAATTCGGTTCATTCTCCAGCAGGGTCAACTAATACCATTTCACAAAAAGTATGATACGGATAGTCAAGGAATAAATGAAAGAGCAAAATGAACTCATCAATAAAACCCTTATGGTACAGTAATTACGAATTATGAATTACGCGCTGTGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGCCCTTCCCTGACAAAAATCCATGCTTCCCAATAAAACGGATGCTGAAGCGGTGTGTCGAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGAGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGG # Right flank : AATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTTGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACATAGAAATCATCCCGCCATAAGTCCCTAGCATCGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACCATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAGGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACAAGCTATATACCAATAATCACTTACACCCTGATTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2740-2562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2739 36 100.0 35 .................................... CGAATTATTGCCAATTAAATGATTCCCGATCGTAT 2668 36 97.2 35 ..A................................. ATACGTAGCATCACCATCTGTCAGCCCAGTATCCA 2597 36 94.4 0 .......G.......................T.... | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 97.2 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAA # Left flank : AGACGAATTAATGGAAACATCTTCCCAGGTATGAGTTTATAGAACTTGATAAAGTCTCAACTAACTATGTGGGGATGAATTAATGAAAATCAAGTGAATCTATTGGGGTTTATCGTGGTTCTAACAATGGTCTCAACTAACGATGTGGAGACGAATTAATGGAAACTCTTGCTCGTCAACCCAACGCGCGATCGCATTCAGATCGCTTCTCCAATGAGAAGTGGAATTAATGGAAACTTACAAGGAATCGAAGATCAGATGGCCGATCCTCAGTAGCTTCTCTTTGTAGAAGTGGAATTAATGGAAACTTAGCTAATTTCTGCATATCTTTCCAGATGCAATTGATAACAGTAGGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAATGAACCAACGAAATAGGAGTACGGACTAATATTCTCTTGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAACTATGTAGCATCACCGTCAGTTAGTCCCGTGTCAATA # Right flank : AGAATAAGAAATTTGGTGGCGACGGAAGATAGATTTAGTTCACGCCATATTGATTCCAATTAATTAAAAAATAAGCTAAATAATTAAATTAAAATCTATCTTCACCTACTTCGATTTATTCCCCTTTTTGAACCAATAATTTCCCAGATACCCCAGCCGTAAAACCCAACCAAATCGCCGCTACAGTAACGCTGGGCTTGATAAATAACGTCGCAATTCCGATGCTGTAGTATTTGCGATCGCAGTTCCACGTTCACGTCATCAAGAGTTTAAGCATGAAAAGGTTGAGCCAATTGCCGGAATTCGGTTCATTCTCCAGCAGGGTCAACTAATACCATTTCACAAAAAGTATGATACGGATAGTCAAGGAATAAATGAAAGAGCAAAATGAACTCATCAATAAAACCCTTATGGTACAGTAATTACGAATTATGAATTACGCGCTGTGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGCCCTTCCCTGACAA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 4694-4504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4693 37 100.0 43 ..................................... TGCATAACAGACAACCCTAACCTCATCCCATTGCAGAGATAAA 4613 37 97.3 36 ................................A.... TCTTTCTCAAGCCTTGCCATGTAATAGCAAGCACGA 4540 37 97.3 0 ...............G..................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 98.2 40 GTCTCCACTAACTATATGGAGGCGAATTAATGGAAAC # Left flank : GCCGTCTAAAGTTTCCTTGTGGTCGCTTCTCCAATCAGAAGTGGAATTAATGGAAACGAATCACACCCTTGAATGATTAGAAGCTCTTATTGAGTCGCTTCTCCAATCAGAAGTGGAATTAGTGGAAACGTAATACAATCTTGTATGTAAGCTAATGCTTCACTCGTCGCTTCTCTTCGGAGAAGTGGAATTAATGTAAACAATGTAGTCCCATCTCCTATCTGACCATAGCTATATAACCGTAGGAAAATCCGCGAACCCATAGCTGTTTTTTCAAAGGGGCCAATTTTCGAGGCTCAAACGCTTACTGCAACTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGTAAAACCTGAAAAGCTTATACTGACGATGTTTGAGCCATCTTTATTGAAAGGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTAGATCAGGTTCACGAAAATGGTCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAACT # Right flank : CAGCATTGGCGATCGCACTGGTAGCAGATCATCTTACACCGACTAAAGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAACGGATGCTGAAGCGGTGTGCCGAGGTTCAGATACTGTTGGCGAAAGTGTTACAAACGCACGGACAAAAGTGTTACAACTCAAAGCCGCAACTACAGATTGAAGGTTTGAGCTTACGTAATACTTAATAAGACAATAATGTATTACATTCGCCAACAGTATCAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGGGTCGCTTCTCTTTGTAGAAGTGAAATTAATGGAAACAGCTGTGTTTCAGATTGTGGATCAGCAAGTTGTTGTCGCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATATGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 5950-4993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================================================================================================================================== ================== 5949 24 100.0 48 ........................ TTAAAAATTTCTTCTGCTGTTTCTGGGTAGCTTATAGTCGCTTCTCCA 5877 24 100.0 51 ........................ ATACTTTACTTCCTTGATAAGATTACTTCTTTAAATAAAGTCGCTTCTCCA 5802 24 100.0 55 ........................ CCAAGCATCATGCTGGTTTTACCTGCTCCTGTTTCACAGGGTAGTCGCTTCTCCA 5723 24 100.0 61 ........................ TCGATCAAGTTAAGTCTAAATTGGCTAGTCTAGACATCCAAGCAGTGAAGTCGCTTCTCCA 5638 24 100.0 57 ........................ TTCATCCCGTGGGAGAAGACGAATGTTGTATTCTCTTCTAGCAAAGTCGCTTCTCCA 5557 24 95.8 46 .C...................... TTGTCAACCGCAGTCTGAACGTCGGCTGGTACTGTTTTCAATAACT 5487 24 83.3 51 ...T.G..GC.............. TTATCGACTTGCTCAACAAACTGAAAAGCACAAATCATGTCTCCACTAATT 5412 24 83.3 49 ...T.G..GC.............. TATGTAGCATCACCGTCAGTTAGTCCCGTGTCAATAGTCTCCACTAATT 5339 24 75.0 155 ...T.G..GCT.......A..... ATTCTGCAATCTGACAAGGTTTAACAAAAACCATATTTTGGCTTTATTAGTGTGACTTGAAACATAAAATGGCAGTTATTGCCGCTTTATGCTTCATAAACTGTAACTTAAAGGATAAAGTGGCCGTCTAAAGTTTCCTTGTGGTCGCTTCTCCA 5160 24 95.8 48 ..C..................... GAATCACACCCTTGAATGATTAGAAGCTCTTATTGAGTCGCTTCTCCA 5088 24 91.7 48 ..C.............G....... GTAATACAATCTTGTATGTAAGCTAATGCTTCACTCGTCGCTTCTCTT 5016 24 87.5 0 CG.................T.... | ========== ====== ====== ====== ======================== =========================================================================================================================================================== ================== 12 24 92.7 61 ATGAGAAGTGGAATTAATGGAAAC # Left flank : GGATACGAAAAGTATCAAGCACCTGATGTAATGACTGCTTATGTAAATTATGTTAAACAGCCATTCTTAGAGGCGATCAACTATTTTAAACTTCCTTACAAAAGAGAGAAGTTGAATAAAAAACTTCAAGAAATAGCAGACTCTCTTATTTAATAGGTAAAGCTATAAATAAAATTAAGAGTGTAGAAATAGCCGGAAACTTGGAATGCGATATCGCTATTATTTGGAATTTCTGTAGGTATTTTGGTGATTGAATAATCTTTGCTAGGCTCAAGGATCTACTTTTTGCTTTCTAGAGTGGAAGCTCTTGCGGCGGGGTCAGCAAAAGCGGGTAATGCTTATTCTCTTGTAGACCCCGCCGATGTCCTACTGTTTAAGGGTTTCAGGGCTTTTATATCTGTGTAATATGGTTGAATTTGGCTGTAGAGCTATACCCCGCCGCAAATGGCATCTGGACATCAAGCACCATAAGGGTTTAAATAAGAGGGGTCGCTTCTCCA # Right flank : AATGTAGTCCCATCTCCTATCTGACCATAGCTATATAACCGTAGGAAAATCCGCGAACCCATAGCTGTTTTTTCAAAGGGGCCAATTTTCGAGGCTCAAACGCTTACTGCAACTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGTAAAACCTGAAAAGCTTATACTGACGATGTTTGAGCCATCTTTATTGAAAGGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTAGATCAGGTTCACGAAAATGGTCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAACTGTCTCCACTAACTATATGGAGGCGAATTAATGGAAACTGCATAACAGACAACCCTAACCTCATCCCATTGCAGAGATAAAGTCTCCACTAACTATATGGAGGCGAATTAATGAAAACTCTTTCTCAAGCCTTGCCATGTAATAGCAAGCACGAGTCTCCACTAACTATGTGGAGGCGAATTAATGGAAACCAGCATTGGCG # Questionable array : NO Score: 4.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-1.43, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 16742-16332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 16741 36 100.0 42 .................................... AAATTCCTTTGTTTTTGCGGTCTGTTCTCTTCCGATACAAAT 16663 36 100.0 36 .................................... ACGTGAAAAAAGTAATCTAAGTATGTTCCATGTACA 16591 36 100.0 40 .................................... GAGCGCCAGATCGCATCGCCTTGCAATGCTAACTGGAATG 16515 36 100.0 33 .................................... GTCAGCGATCGCTACGAACTTTACCCCACTCAA 16446 36 97.2 44 ............C....................... AATTCGATCTGTTGTAGTGTAAACGGTACAAATATCACATCTAA 16366 35 83.3 0 ............C..............T-.CT...T | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 96.8 39 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : GAAACAATATCTGGAGTGGCAGTGCGTCTCGGTATAATTCTTTTTATGAACGTGGCTCTAGACCCTGAAACTTTAGTTTCAATTGATACTCCTAACCTCCTGCCTTCTGCCTCGTGCCCTCTGCCTTTTTGTAAGGAAAACTTGGTATAGCATGGCGGAAATCAACCACCCATTCCAAATCAATAAAACCCTTACGGTAGAGTAATTACGAATTATGAATTACGCCCTGCGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTGAAACGGTGTGCCGAGGTTCAGGGAAAATAGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGTGGTATGTTGGTGATTGGTGAAATGGCAGATTGGCGATTAATTTTTGTGGCCTTCGGAAACGGCTTCTGGATTCCTTACTGGATAAGGGTCTAAAATTGAGGG # Right flank : AAAAAGGTCGGGATATTTACATCTCGACCTTTACAAGTATTTTTAAATAAATATATTTTTTATTTTTCACTGCTCATAAACTTTAAGAATCGCCTCACCAATTCCCTTAACCTTAGCTACCAATTCCTCTGGTTGTACTACTTTCACGTTGCCGCCAAAACCAACAATCCACCGTAAAAATTCCACGTCACCCAAATACCATATAGGCAATACCGCCTGAAAACGATTGGGAAACTGCTTATCTGTGGTTTTCTTCAGGCAGAAAATCGACTTAGGTAACATTAATTTGCCACCCTCTACAGGTGGAGACATCTTCATTTGTTTTGCAGGAAATCTCTTAGTTCCTTCCGTAATAAACCGGAAGATAAAATCATTAAACCACAGTTCTACTGTAATACAAACTTGGGAACGTTCTTGCTTATCGTTAGACAGAAACTTGCGCTGGTCATTTGCACTATACCCCAAAAAAATCCCGGCGCTAGCAGCAGAAAGTTTCTGTA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 17431-17610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000107.1 Nostoc sp. UCD121 NODE_107_length_25877_cov_7.85229_ID_213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 17431 35 100.0 37 ................................... ACTATAACGTTGAGAATGGAACGTGGGCCGTTATCAG 17503 35 100.0 38 ................................... TTCTATTTCTACTACACTCATTTCAGTGTAGTACAGAG 17576 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 3 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : AGCATCCCTTTTATTGGGGAGCATGGATTTGTCAGGGAAGGACAGATCCCTTAGTCGGTACAGGAATTTTTAACTAGTACCGCAGGGCGTAATTCATAATTCGTAATTACTCTACCGTAAGGGTTTTATTGATTTGGAATGGGTGGTTGATTTCCGCCATGCTATACCAAGTTTTCCTTACAAAAAGGCAGAGGGCACGAGGCAGAAGGCAGGAGGTTAGGAGTATCAATTGAAACTAAAGTTTCAGGGTCTAGAGCCACGTTCATAAAAAGAATTATACCGAGACGCACTGCCACTCCAGATATTGTTTCGGGGCTGAAGTCCAAAGCTCCAAACCCCTATAATTTCGTTGGCAGCCCCGGCAGCGTTATTAATTAAGAGTTTTAGGCTATTTCTCTGACCCATAATTCTCAATTGAGGCTATTGATTTTGGATTATTTTGACAAGCCCCGAAAATCTGCTGTAGGATTACCTTCAGGTAAGGCTTTCAGAAGCCAGCC # Right flank : CCATAAAACTAGCGAGCGTTCTGCAACGCTGCGATTGCATCTATTTTTTCTTGTGTTGCTAAACGAAGGGATGATTTTATTTATGTAGGTACAATTCGATGCTTAAAATAATGAAGTATCTTAGCATTTTTTCTGTTTTGGAATAGCATAAAGTTTTTCGCTCATTGAAGTGATCGCTTTCATACAACGAGTTAATTGCTGCATTAACAATCAAGTTTACTTTTGCTGTCTCCACGCAAGCTTGTACTCCCTTTCAACAGCCGCCACCAGCTTTGCCTGCAAAGATGACAGATATGGTTTAGCAAAATCCCCAACCCTTGCAACAGCGAATCCACAGAAGAGTCACGGCTGGGCACTTGATGCAACTGCCGTAACTTCACACATAACTACTGCTCCCTTCACTTTCGTGCGATGGCGTAACTGCCCTCTGTTGGCGATCGCCCTTACCTCAAAACAAAAAATCACCCAGTAGTTATATCCGGGAGCAATGCGGTTTTGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 93080-93258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000003.1 Nostoc sp. UCD121 NODE_3_length_106738_cov_10.0239_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 93080 37 100.0 34 ..................................... ACGCCATCGCACTACTGCGATAAGCAACGCAACG 93151 37 100.0 34 ..................................... ACAGGTAGATAAAGCAATGATAAAACAATACTGG 93222 37 81.1 0 ........................T..A.G...TTTG | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 93.7 34 ATTGCAATTTATCAAAATCCCTATCAGGGATTGAAAC # Left flank : TCTTTCATCATCTCTACCCTAAATTGGCGAAAACTTTATTGTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAAAGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAGCCGCCTGTATTGGCGAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTCTTTCTAGCTGGGTTCTCATATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTAAAGTCCTCAAAAAGTGCTTCTATTCCAAATACAGCAAGGCTTTCAACCCATTAGTCAGCTAATCCTAATCCGCGCAATCTCTGAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCTCTCGAATCGCGCAACTGTACCTTGAAAAGTAAATACAGCTTGGGTTTCAGGCTCCCGCTATT # Right flank : GAAAAGTGGTTGACTGTGGTTTTAGGCACTAACTGATCCCCCCTAGCCCCCCTTTTTAAGGGGGGAACCGAAATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTTGTTACCGAGAAGAAAACTTTTCAAACATCCTCTTAGTAAAAGCTAGAAGTTGTGTAGGTTGGGTTGAGCAATAGCTCAACCCAACCTACTATTTTTCTTAACTGAATGATATTGATTTATAGTGCGATCGCTAATCTTTTCGATTGAGTGGGTGCTAGAAAGCATCGATTTGCAAAAGTCAATTTTCTAAAAATAAAAACACAGATGAACACTGATAATTTCTCTGTATCCATCTGTGATTATGTGGTGTCAATACCTGGGAATTAAACCATTAGACTTGTTGTATTTCTGGACGACCATCTTCAACCACAAATGAAGCCCGCTTACTAATCGTGCCAAATGGGGTTGTGACATTTGACATAACCAAATAGTCTGTCTT # Questionable array : NO Score: 8.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 3137-2668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZS010000127.1 Nostoc sp. UCD121 NODE_127_length_22766_cov_10.3347_ID_253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3136 37 100.0 35 ..................................... TTATGTGTCCCCACTCCACTGGTGGCAAGTTTCGG 3064 37 100.0 34 ..................................... ACCAGAGCGATCGCTGAACATGGACGTACTATTC 2993 37 100.0 35 ..................................... ATAATTTGTCCGCTTGAAAGTACATATCCGTTTAC 2921 37 100.0 37 ..................................... CTATGGTTCCCCAACCGAACTTGGTATCATTTATATG 2847 37 100.0 34 ..................................... CAATTACTGAATGACCCTCCCTAACACATAATTC 2776 37 100.0 35 ..................................... TAATTAACCAAACCCTTGTAAATTAAGGAAAAAAG 2704 37 91.9 0 ....T....A......................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.8 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GACTCAGGCGGATTACAAGTTAAATCCAAGTCAAGTTGGGTTGCTGCGCCTCCCGTTCCCGGTTCTTTTGTCTGTAACATCGGCGATATGCTAGACAAGATGACGGGAGGTTTCTATCGTTCTACACCTCATCGTGTACAAAACCAGTCCCCAAATCATCGCCTTTCCTTCCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCCATTGAATTAGATAATATAGTAGGGAATGATAATATAGGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTATGTGTTGAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACTGTATTATAGGTTTTTAAGTCAGTTCTTCTTTGCTGAGTCACCTTTTCGTTAGGTTCCTGTATGTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTACAGGCCCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCACTTCACCAAAAG # Right flank : TAGCTGTTTCTACTTTTTGCAATATCTTACGTTCTATATTGAAACCCAAAAGTTGCTGGTAATACTGGGGAGAGAAACAAAAATGTATGAGTCAATGGGTTTATAATTGAAAACTGTGAATCAGCAAGAAGTTTGATCTAAGGAATACCTGGCTAAAATCTCCTTCCAAGGGGAGATGCCAAAGGCGAACGGTGACAACTCATAATTGGAGCGAAGCGACTGGTGAGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGTGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAGCATCTAGGCTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACAGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAGATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGCATTGTATTACGGCGAGAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //