Array 1 23548-22237 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVO01000018.1 Salmonella enterica subsp. enterica serovar Wippra strain BCW_2903 NODE_18_length_85561_cov_0.652587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23547 29 100.0 32 ............................. CCAGATTTACCTAATAAAATGTTATATTTAGA 23486 29 100.0 32 ............................. CGAATGTGGTGTACGTGTGGATGGAATTTTTT 23425 29 100.0 32 ............................. GATTATCTAAAACTATTTCACCGGATGGAATC 23364 29 100.0 32 ............................. TAACTACAGTATGATTAATTTATTTATGTTAA 23303 29 100.0 32 ............................. ATTCTAACGTACAATACGATATTAATAACGCT 23242 29 100.0 32 ............................. GTTTAGGTAAAACGCCAATAGAGGCATTTTTA 23181 29 100.0 32 ............................. ATTATAGAGGGACTTATGCTATAGAGATAGGT 23120 29 100.0 32 ............................. CGTCAACTGATTATGTTGGATTTAATTTAAAT 23059 29 100.0 32 ............................. AGTGTTATAATGATTACATCAATCACAATGAG 22998 29 100.0 32 ............................. ATTCAAAATCAGGAGTTAGAGTAAGAAATATA 22937 29 100.0 32 ............................. TCACCGATCCCGTATCAGGACAGGTTTATGCG 22876 29 100.0 32 ............................. TTGTCCATGCTATCGGCAATTTTCATCAGGCC 22815 29 100.0 32 ............................. ATTTCGCAGGTAAGCTCCAAGCTGCGCACGCT 22754 29 100.0 32 ............................. TGCAGCTGCGACCAGCGGCGACGATTTTGATT 22693 29 100.0 32 ............................. CCAGATCACGTTTTTCTCGCAGAACTTCGTGG 22632 29 100.0 32 ............................. CTGCCAAAGCCGCCGAACATCGGATATACAAT 22571 29 100.0 32 ............................. TGGCAATACTGCCGTTTCCATGTGGCAATACT 22510 29 100.0 32 ............................. ACTGACATTGTCAGCTAGAACCTTACACCGTG 22449 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 22388 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 22327 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 22266 29 96.6 0 ............T................ | A [22239] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGTCGTCATGGCCTGGGCGGCCAACACAGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40650-39707 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVO01000018.1 Salmonella enterica subsp. enterica serovar Wippra strain BCW_2903 NODE_18_length_85561_cov_0.652587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40649 29 100.0 32 ............................. TTTGTTCCGCGTGATGCGATAACTATTCAAGA 40588 29 100.0 32 ............................. GAACAGTATTTAGGTGTTTTAAATGTTCGTAT 40527 29 100.0 32 ............................. GTATTAAGAATAATGAAAGGAATATAGTCTCA 40466 29 100.0 32 ............................. AGTGTTATAATGATTACATCAATCACAATGAG 40405 29 100.0 32 ............................. TTAATTTACAATATTCAATTGACCCTTATGGA 40344 29 100.0 32 ............................. ACAGTAACATCATTTATTAATTTAATTGAAAA 40283 29 100.0 32 ............................. GCTGACTGCGGAGCTGGAATCCAGAGGGTTAT 40222 29 100.0 32 ............................. CCGCGTACCGGGTTGGAAATACCGGAGTTATT 40161 29 100.0 32 ............................. GCGTATGAAATCGACTACAGCAGGCGCAAACA 40100 29 100.0 32 ............................. CACGTCAAAATATTAGTCCACTACTGGCAAAG 40039 29 100.0 32 ............................. TCATTACCTGCGGCGTTCTTGTCGCAGCTGCC 39978 29 100.0 32 ............................. ACGCCGACACGTACACAGCTTAATACGCTGAC 39917 29 100.0 32 ............................. CTGGTGCCGCGCCAAGATTCACCGCGTTTACC 39856 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 39795 29 100.0 32 ............................. CACGAGTGGCAAATTGATTTCGACGAAAAACC 39734 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTTTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //