Array 1 45158-43736 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANG01000022.1 Streptococcus agalactiae strain AB-42 NODE_2_length_322205_cov_65.536_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45157 36 100.0 30 .................................... ACTTTTTTGCGTACTCTATTCAGTTGTTAA 45091 36 100.0 30 .................................... TATAGACGTGTCCTTAAACTGATTAAGGTG 45025 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 44959 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 44893 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 44827 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 44761 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 44695 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 44629 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 44563 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 44497 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 44431 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 44365 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 44299 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 44233 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 44167 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 44101 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 44035 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 43969 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 43903 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43837 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 43771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //