Array 1 163428-161341 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163427 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163366 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163305 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163244 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163183 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163122 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163061 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162999 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162938 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162877 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162816 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162755 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162694 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162633 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162572 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162511 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162450 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162389 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162328 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162267 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162206 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162145 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162084 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162022 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161919 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161858 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161797 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161736 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161675 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161614 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161553 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161492 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161431 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161370 29 96.6 0 A............................ | A [161343] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181052-179559 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181051 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180990 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180929 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180868 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180807 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180746 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180685 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180624 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180563 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180502 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180441 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180380 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180319 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180258 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180197 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180136 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180074 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180013 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179952 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179891 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179830 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179769 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179708 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179647 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179586 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //