Array 1 4565-1837 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKV01000113.1 Dolichospermum sp. UHCC 0299 scaffold115_cov0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 4564 23 100.0 50 ....................... TATTCTTGATGGACTCCAGGGTATTAAGGATAAAGAGTTTCCACATATCT 4491 23 100.0 52 ....................... CTTCTTGTTCTTTTTTATCTTGTAGCCAAAGCTTATAAGTTTCCACATATCT 4416 23 100.0 50 ....................... TATCAATGCTTGGAACATCATTGACCCAAAGAATATGTTTCCACATATCT 4343 23 100.0 49 ....................... ATCAGCAGCCAATCCTAAAAGGGCATAGGTTTTTAGTTTCCACATATCT 4271 23 100.0 54 ....................... TACCAATTATTCAAATAAAAATATTTTTTATTTACCCCTTGTTTCCACATATCT 4194 23 100.0 51 ....................... AAAAATGGGACAACTCAAGAATAAACCACGTTCAACTGTTTCCACATATCT 4120 23 100.0 49 ....................... AGATAGCTAAAATTTTGTCTGAGCATGGTTTTAGTGTTTCCACATATCT 4048 23 100.0 48 ....................... TTATTTCGTCGTGTTCGATTTTTGAAAGCTCTATGTTTCCACATATCT 3977 23 100.0 50 ....................... AGAAATTGTTTTGTAGAACAATTAAATATATGTTAGGTTTCCACATATCT 3904 23 100.0 49 ....................... CCTCGTTTAATCTTCCTAGTCCGTGAAAGATTTTGGTTTCCACATATCT 3832 23 100.0 50 ....................... ATAGCGTGGTTCGGGACAGCAGCTTTTAATAGTTTTGTTTCCACATATCT 3759 23 100.0 53 ....................... GACTTGCGCTGTAAATTTTTTTGTGCTATGGTTCAGGAAGTTTCCACATATCT 3683 23 100.0 53 ....................... AAAAAGTTAAGCAACGGTGGGAGTTAGAAGGCGGTTCAGGTTTCCACATATCT 3607 23 100.0 50 ....................... ATTTATCCAAATTTTGTTTCTGTCTTTAATCCAACGGTTTCCACATATCT 3534 23 100.0 53 ....................... TTCCCCAGTAGTTGAATACCTAAATGAGATAGAGACAAAGTTTCCACATATCT 3458 23 100.0 53 ....................... GCAAAACCTATGTTTCCCGATTCTTTTATGTAAGCTGAGGTTTCCACATATCT 3382 23 100.0 48 ....................... GAGTAGTCTGTTCCAAAAACAGCAGAGAGTTCAAGTTTCCACATATCT 3311 23 100.0 49 ....................... AAGCCATGATGCGATTCCTTTGTGTTTTAGTTTATGTTTCCACATATCT 3239 23 100.0 53 ....................... GCTTCATAGAACCATCTTGACTCATGTCAGGAATGACGCGTTTCCACATATCT 3163 23 100.0 51 ....................... ATTCTACAATGAGACAAATAACCATTAAGTGCAGCTTGTTTCCACATATCT 3089 23 100.0 48 ....................... TAATAAGACAGCATCAATTAATCCTACTACTTTTGTTTCCACATATCT 3018 23 100.0 52 ....................... ATTAGAGTGGTAAATTTTTGGGGAGAGGCAGGGGATCTGTTTCCACATATCT 2943 23 100.0 54 ....................... TTTTTGTTGTGCTGCATCATCCTTATTCGATGATTTCCAAGTTTCCACATATCT 2866 23 100.0 50 ....................... AATTCAGCGGGTTTTGTCCATTGGCATAATTTTTCAGTTTCCACATATCT 2793 23 100.0 47 ....................... ATAGCACCACGATTGATTAAACGAACTCCGGTAGTTTCCACATATCT 2723 23 100.0 52 ....................... AAGGTAGTTGTTGAGGCTGGAGCAGTAGTTCCGTTAAAGTTTCCACATATCT 2648 23 100.0 51 ....................... AAAACTTAGCCAACACATCCGGCGTAACCACGATATCGTTTCCACATATCT 2574 23 100.0 50 ....................... ACATCAAGGGCTTCACGTTACGAAAATATCCCAGACGTTTCCACATATCT 2501 23 100.0 48 ....................... AATAATTTAATGACTACGGCTAGTCAAGCTAATTGTTTCCACATATCT 2430 23 100.0 51 ....................... AGGAAAAACCCGGAGAAGTGGTGCTAAACGCCCTTTTGTTTCCACATATCT 2356 23 100.0 47 ....................... ACAACAGTAGTGTGAGATCCCATAGCTTGCAACGTTTCCACATATCT 2286 23 100.0 51 ....................... CCAATAGCATTGATAGCAGGAGCACTTGGTCCACTACGTTTCCACATATCT 2212 23 100.0 49 ....................... GATACTTTGATAGCTTTTCTACCAGGTCTAGTCTTGTTTCCACATATCT 2140 23 100.0 52 ....................... AGTTAGCCATCTTAGCTCTGATTGCACTGGGTATTCTTGTTTCCACATATCT 2065 23 100.0 50 ....................... TACCCTGGATAATATCTATCCACGATCTCAGTTTGCGTTTCCACATAATT 1992 23 95.7 49 ........T.............. TTATCAGTTTTTCTACTGCGAGGATCACCAATTTGGTTTCCACATAATT 1920 23 95.7 38 ......G................ AGCGATCGCTATTTACATCTCCAAGTTTCTTATTACTT Deletion [1860] 1859 23 87.0 0 .......A..........A...G | ========== ====== ====== ====== ======================= ====================================================== ================== 38 23 99.4 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGATTATTTATGATTTACCTGACAATAAAGCTGCCAATAAACGCCGGACTCGTTTACATAAAATGCTCAGTGGTTATGGTAAGTGGACTCAATACAGTGTGTTTGAGTGTTTTTTGACTGCTGTACAATTTGCTCAGTTGCAAGCCAAGATAGAAAAACTGATCAAGTCTGATGAGGATTCTATTAGAATGTATGTGCTGGATGCTGGGAGTGTGAAAAGAACTATTACTTATGGTTCGGAAATTCCTAGACAAGAACAGGCTATCATTATATAATTGATACATCAGCTTAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTGTGCTTGACCCAAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCACATATCT # Right flank : GTTGTAAAATATTGAGTATCAAATCATGTAGCATTAAAAAAAATGTCAGAACTAGCTACATCTAGCAACCGTAAAAACCCATCAAAAAACACCCCTTTAATATGGGCAGATGATACCGAATTAGTTAGCTTAGTTTTTGACCTAGAAGTAACTGATTCCACCGCTCTATATTCGCAATATACCATTGGACTTCATGCTTGGTTTCTGGATCAAGTGCGGCAAATTAACCCAACGCTTTCAGCATATTTACATGATGGTGAGTCAGAAAAACCCTTCAGCATTTCTGCACTAGAAGGTCAATTACTTCCCACCGGAAAACAACTACAACTGCAATCAAATCAAATATATCGTTGGCAGATAAACGCTATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAATACAACCGCCAACTACTTTGAAATTAAGGGATGCTTGCTTACAAGTAAAACAGATAAGTATTGTTAATCCACCAACTACTTACAACAAACTACT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44591-44770 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKV01000008.1 Dolichospermum sp. UHCC 0299 scaffold8_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44591 37 100.0 37 ..................................... ATACCAAGTTTTTAAAGCTGCTAATGCCGGATCATCT 44665 37 100.0 32 ..................................... AATTTATTTCTCAATGAAAGCTATGGGAGAAA 44734 37 86.5 0 ..........T......................GGGG | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 95.5 35 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATTTCTGAGGATAAACGCCGGACTAAAATCCATAGGATTCTCAAATCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTCAATAAACTCATCAAACCTGAAACCGATAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATTGGTGGTCAAGAACCCCCTGATCAGACGATTTTCTTCGCTTAATGCGCGGGTGGGTGGGTGTAAAAAACTCAGGTGAGAAAAAAATGACTGCAATCATCTCTACACAAGCTTTTTATGGAGTTCGTGGAGTTCACCCATCCGCGCACTTTGCACAGCAAGGGTTTCAGCTATTTTACTCCTTGACACTTTTTCTGAAATGGATTATTATAAGACTATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGACTTCAGAACTCCGCG # Right flank : GTAAATGAGCAATCGTACAGAAAGTTACGCTAAGGCTGTAACCCTTACTGGATAAACATTCTGCTAATCAATATTTTTGACGATTCTCAAATTCTCAACGTACCAAATAAACTTAAGTTTTAAATGGTACAGTTTTATCCCTTTCAATCAGGATGTTACCAGTAGGCTATTAAGTCCTTATCGTAACTTTCTGCATGGCTGCTCATTTGACCCCCAAATCCAGAGCCGGTTTAAATAATGGTAATCATGTTTTACTCAAGAAACAAGAGGGGGATTTGGGCTTACGTCGATGTGATTAGGGGACCAAATAAGAAAGTTGAGGGCTTGAAAGGCTGGGTTAATTCTAATTATCTTTCTTGCACTAAAGAACCCATTGATTAAATTTTGAACATTTTCAAGGAAAATCTATGAAACCTGTTTTGAAGACCCAAAAATTAGCATTACCACAAGTACAGCAATACCTACAGTGGGCGAAGCGATCGCTATTTATCTTAGGATTC # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //