Array 1 1165727-1164208 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNJ01000008.1 Listeria monocytogenes strain NRRL B-33365 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1165726 29 100.0 37 ............................. GAAGTTTGGTGTAAACAATAATTTCTATTCAACTGGT 1165660 29 100.0 34 ............................. AATTTACAAGTAATTGCAAATGATATGTTGCCAG 1165597 29 100.0 36 ............................. CTTGTTGAAGTCGTTGATTTAATCTGTCTATACTTG 1165532 29 100.0 35 ............................. GTGCTAAAAGGTCGACTGGATGCAGAGTATACGAC 1165468 29 100.0 34 ............................. TTGATTGATGAAGCGATGCGCTTAAGTGGATTTG 1165405 29 100.0 35 ............................. ATGAAAGCACTTTTTAGGACATTTTGAAATTCTTC 1165341 29 100.0 37 ............................. ATTATCCCAGTACACATTTTTAGTAATCTCGATCACC 1165275 29 100.0 34 ............................. ACTCCATTAAATCGCATCTGTGTTTATAGAAATC 1165212 29 100.0 37 ............................. TAGATCACGTGGCTCGTAAAGAGATTGTCGGTTCAAT 1165146 29 100.0 37 ............................. TCGTGTATGTCTCGCTAGCTATCACGTTCAGTGCATC 1165080 29 100.0 36 ............................. CTAGTATAAACTGGAAGTAACTGATCATTTAATTCA 1165015 29 100.0 38 ............................. TCATTATCATTGATAAATGATTGTGCTTTACGGGTATT 1164948 29 100.0 36 ............................. TACAGTGTTCGAGAATGGGCTAGACTGCAAGGGTTT 1164883 29 100.0 37 ............................. AAGGAATTTTTGTTTCTTCAGCAAGTTCTCTTTGAGA 1164817 29 100.0 36 ............................. CCCACCTCGCCTTGATCAGTTTAAAGTCGTCTGCTT 1164752 29 100.0 38 ............................. TCCTAACAGATGTAATTGGCTCCAAAGTCGCTCATATC 1164685 29 100.0 35 ............................. CGTTGCATTAGCGGGCTTTTCCACTAGCGTGTAGC 1164621 29 100.0 34 ............................. TCTAAATCGTTTATCGTCTCTAAAGTAGCTTTTT 1164558 29 100.0 37 ............................. AAGGTTTTTCGCATGCTATGCGTACCCAAATTCTCTA 1164492 29 100.0 34 ............................. GAATTCAATTTTGTGTTATTCCATACTGGAATGC 1164429 29 100.0 35 ............................. AAATTAACAAATGAAACGCGAATTATAGGTAAACG 1164365 29 100.0 35 ............................. ATAGTATTCCTGTTTCCATATCCGTTCCCACCATC 1164301 29 100.0 35 ............................. TTGCATCAAACATCATGTTAGTATATTGAGCTTCT 1164237 29 93.1 0 .......................C....C | A [1164212] ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCATCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTATTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAAAAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1181926-1181319 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNJ01000008.1 Listeria monocytogenes strain NRRL B-33365 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1181925 29 100.0 34 ............................. AGCTAAAAAGAATAAGCCAGTTAAGCGAATTCTG 1181862 29 100.0 37 ............................. TACCCAAGATTAAATTTTTATGATCCGCTTGACTTTC 1181796 29 100.0 35 ............................. TCCTAATAGATGTAATTGGCTCCAAAGTCGCTCAT 1181732 29 100.0 34 ............................. TCGTCCATGCCTTCTTCAAAATGAATGTGTGATT 1181669 29 100.0 36 ............................. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 1181604 29 100.0 35 ............................. TCTGAAAAAGCAAGTTGTAATACACTGTTTTTTGT 1181540 29 96.6 35 ..............A.............. CTTATTATCGAAGCAGGTACAAAACTATTAACATC 1181476 29 93.1 36 .........G.C................. TGTTTTTCGCAACGTCGGTGCTTCGAGCCATCGAAT 1181411 29 96.6 35 ..............A.............. GGAATCACGGACAGTCAGGCGAAGATAACTACACT 1181347 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 96.9 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAATAGTGGGGCTCGACAGAAAGTTGTAAGTAGTTGGGGGAAGATGAGTTTGGTGATATTTGCTTGGGGAAACCTTCTGGATAAGGGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCAGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCACGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //