Array 1 1713-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCA01000036.1 Nitrosomonas sp. GH22 GH22_contig000037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1712 37 100.0 34 ..................................... TTCGATAAGTTCAGGCAACCCGACAACATCATCA 1641 37 100.0 35 ..................................... CTCAATCTTGGCCTTAAGCGCATCAATCTCTTTAT 1569 37 100.0 35 ..................................... TCTAGCGACCCAAATCACCCTCACTTTGAACAGGT 1497 37 100.0 34 ..................................... CCATCTCTAGTGTGTTACTCAGATCAGCTAATAC 1426 37 100.0 34 ..................................... ACTCTGCTGGCGAGGCACAAAGCTGGTGGGCGTT 1355 37 100.0 34 ..................................... CCCCTCAATAGGAGGAAATTCAGGAACATCTGTG 1284 37 100.0 34 ..................................... CTCTCTCTAATTGTTATTACTAAAATCATCTTAT 1213 37 100.0 35 ..................................... TGCCACAAGATCGCGTGCACCAAGCCCAATATTGG 1141 37 100.0 35 ..................................... CAGAAGGCCCAGGTAGACCGGTTGATCCCGCCCAC 1069 37 100.0 34 ..................................... TGTGGCTGGATTGAAGGCAATGGTAGCATCATTA 998 37 100.0 35 ..................................... TTGCTTTGAACCATATACTTACCATTCTTGCTGAA 926 37 100.0 35 ..................................... ACCCATGGGGGTGAGCGGTTTCGCGCTGAAGCCAG 854 37 100.0 34 ..................................... ACAAGCATCCAGAAATGAAAGACGGAAGAGTCAA 783 37 100.0 35 ..................................... TTAGAACACCGAAGAACGTGGAATGCATCAATAAG 711 37 100.0 34 ..................................... TGCTTCGGTTTGATGGCTGGATTTGCCCTAGCAG 640 37 100.0 34 ..................................... GCCTTATTCGGAGCTACCGGCAAGGACACAATAG 569 37 100.0 34 ..................................... ATTTTATCTCCATCATGGTGAAGCTTATCAGACC 498 37 100.0 34 ..................................... CAGTTCTTGATATGCCTCCACAGAACCATGCAAA 427 37 100.0 34 ..................................... CCGGACTTGTTAGGGTGCAGATTTAATGCATCAT 356 37 100.0 35 ..................................... TTCAATGGGTCATCTGTTGCCTTAACCGGAGACAA 284 37 100.0 34 ..................................... AACCCAACCAACACTGTTGGCGGCATAAATCGAG 213 37 100.0 35 ..................................... ACCAATCCAGACCAGGATTCATCTGTCGCTAACTG 141 37 100.0 35 ..................................... CTCGTATTTTGCTGCGTATTTTTGCGCCTGCGCTG 69 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 24 37 100.0 34 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCACGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACAGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATCTCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : CCAGAAGGCCCAGGTTGAGCGATTTATACCCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.10,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 38-2298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCA01000037.1 Nitrosomonas sp. GH22 GH22_contig000038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 38 37 100.0 34 ..................................... CCGGACTTGTTAGGGTGCAGATTTAATGCATCAT 109 37 100.0 35 ..................................... TTCAATGGGTCATCTGTTGCCTTAACCGGAGACAA 181 37 100.0 34 ..................................... AACCCAACCAACACTGTTGGCGGCATAAATCGAG 252 37 100.0 35 ..................................... ACCAATCCAGACCAGGATTCATCTGTCGCTAACTG 324 37 100.0 35 ..................................... CTCGTATTTTGCTGCGTATTTTTGCGCCTGCGCTG 396 37 100.0 36 ..................................... CAGAAGGCCCAGGTTGAGCGATTTATACCGCCAACA 469 37 100.0 35 ..................................... CCTTGATTAATCTTCTTGAGCAAGGTGGATGTAAT 541 37 100.0 35 ..................................... CAGAAGGCCCAAGTAGACCGGTTGATCCCGCCCAC 613 37 100.0 35 ..................................... AGAAAGATCCGATCTGCTATCAAGCTTTACTAGCT 685 37 100.0 35 ..................................... AGGCGGGGGACGAATATAAAATGCCATCCGATAAA 757 37 100.0 34 ..................................... AGACAAATTAGGCGATGCCATAATCTTACCCTTT 828 37 100.0 34 ..................................... TGGTCATCCTGCTTTGCAAGAATTTGGCATGCAG 899 37 100.0 34 ..................................... TAATCCATGACGTGCCATTATACGCCATAGGCTC 970 37 100.0 33 ..................................... GCCTCACTGTCCTTCAGTAGCGTGGAACGTATA 1040 37 100.0 35 ..................................... AAGCTGCTCGCGACGATAGGCTGTCTGCCAGAGAG 1112 37 100.0 35 ..................................... GCCGATTTCCGCAAAATACTGAGTTGTACTGCCGT 1184 37 100.0 35 ..................................... GCCGATTTCCGCAAAATACTGAGTTGTACTGCCGT 1256 37 100.0 34 ..................................... TCAAGCTGCTGGGTGCGTATGTACTCTTCCAGCT 1327 37 100.0 34 ..................................... AAAAATGCTCCTGTTTTTTGCTCAGGAGACCCAT 1398 37 100.0 34 ..................................... ATACGATTTGGGAATTATGCATCCGGAGTGCACG 1469 37 100.0 34 ..................................... CATTAGATTATCTTATAAGGGAGTATTTATAATG 1540 37 100.0 35 ..................................... TGTCCGTGTGATAATCTCACCTTGCACGGTCTCAC 1612 37 100.0 36 ..................................... TGCACCATCACCCACAGTATCTACCGCTTGATGATG 1685 37 100.0 34 ..................................... ACGCAGCTGGTGAAGGCCAGGCGTGGTGGTCTTT 1756 37 100.0 36 ..................................... AAAATGTTTGGTGACAGCAATCTCTCTTGGGATCAG 1829 37 100.0 34 ..................................... TTTCTGCGTGCGGGCGCCAAAAAATGTAATCGGT 1900 37 100.0 34 ..................................... ACTTATCTGGGAGGCGGTGTTGATGTTAGTCCAC 1971 37 100.0 36 ..................................... TATATGGGGGAACGCCCCCAGATTATCAACATCCGG 2044 37 100.0 35 ..................................... TTCTACAGAACCAGCTGACAATGCGGCGGCTATAT 2116 37 100.0 35 ..................................... AGGATTGATCCATCAATCCCAGTTGTGACCAAGCT 2188 37 100.0 36 ..................................... GAAAGACCGGCATCAGGGTACATAAGAGATGTAGTG 2261 36 75.7 0 ..................T.CC...A.T.-.AA...T | T,A [2278,2282] ========== ====== ====== ====== ===================================== ==================================== ================== 32 37 99.2 35 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : AACCAGTTCTTGATATGCCTCCACAGAACCATGCAAAG # Right flank : TGCCCCTTAACGGCAATTAAAAATTGCCCCCCCTGAATTAAGCTGGTCATTTTTTCTATGAGGTGGCTGCTATTATTGTTAATACAGGAGATGGCAATGACCATTAGGGTATTAAAGAAGCAGGGAAAGAGGATTAAAGAAAACTGTATATCATGCGGGCACCTCGAATAACCCGAGGGTTTCAGTCAATCCTGCCGCGAAATGATGAGCGCGACCGAATTCGGTTTGATTTCCATGACAAATCGCCGCTTTCCTGGCGATGTCGCGCCGCTTTTACCCCGAATCTCCCTGGGCATTAGCGATTCGGTCCATTTTGAGTGTCAAGAGGCCTTGATCCCTGTCTCTCCAAAGTAGACCAGTCGCCTCAGGTTGTAGCAGGCCGCCATCACCGAGCTAAGATGTTTAGTCCCACGGTGTGCTGGAATGGGTCAAAGATAAAACGATCTGGCTCATTTTTCCAGATTTTGCAGATGTATTCATAGGGTGTTAGGCCTTTGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 2454-1857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCA01000042.1 Nitrosomonas sp. GH22 GH22_contig000043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2453 36 100.0 34 .................................... AAACGAACTTTTCTACACCGTTTATGGTGACTGT 2383 36 100.0 34 .................................... AGTTTGAATTGCAAGTTAAGCTCGGAACGTACTG 2313 36 100.0 34 .................................... CCCTACTCCATAGTGTACATGGCCGGTGTATCCG 2243 36 100.0 36 .................................... GTCAGCGGCTGTGAAGAAATACTCTCCGGCGATATT 2171 36 100.0 35 .................................... TTAAAAAATTTGATCATTTTATTTCTCCAATGTAT 2100 36 100.0 32 .................................... AAAATTATTTTTATCTTTTTTGCGTAATTTGG 2032 36 100.0 34 .................................... TCCATCTCCCTTGTCTATTAATGAGGATAGTATA 1962 36 100.0 34 .................................... TTATATCTATGGTGATTTCCTCACCTATATCATC 1892 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 99.7 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCCGCGACGGCTGGCGCGCTTGCATCGCTATCTGGTAAAACGTGCCGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAACGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAATATATTGATTGTAAAGAGAAAAATGACAGCAATCA # Right flank : GAGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTTGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCTGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 68601-67650 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRCA01000008.1 Nitrosomonas sp. GH22 GH22_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 68600 36 100.0 34 .................................... TGCCGCATGCTTCCGCAGCAAGCTCTAGTAACTC 68530 36 100.0 33 .................................... TTTTTCTCTCTGTTATTGAAAAGTTAATTGGGT 68461 36 100.0 35 .................................... TTTACTGTTGCATTTTATCTTCTACCCATCATTGA 68390 36 100.0 34 .................................... ATCTCATCGATGCTTTTGTGTGCTGCTATGTCGT 68320 36 100.0 34 .................................... TCTATTTCTACATATTTACTACCGTTCTTATGGT 68250 36 100.0 35 .................................... CTCTCTTTCGCTTTATTAATTGCGAATATTTCTTC 68179 36 100.0 34 .................................... GTTGTATTTCATCACAACAAAACGGCTTGCATTT 68109 36 100.0 35 .................................... CTAATCCAATGTGATAGGCTTAGGCTGTGCTTCTT 68038 36 100.0 35 .................................... TAGGTATGTCTTGACAACTAATAAGTTTCTTAAGC 67967 36 100.0 34 .................................... ACGCTATCGCTGGAGGTATTGCTCCTGTACCTAC 67897 36 100.0 35 .................................... AGATGTTGTTGTTTGGCTTGATAGTGACATGAAAA 67826 36 100.0 34 .................................... ATGATCCAGATGTGGCATTAAACAGCCTCAATAG 67756 36 100.0 35 .................................... ATATCGCACGACCATGCATCGTGCCCTGCGGCTGA 67685 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =================================== ================== 14 36 99.8 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGACAGCAATCA # Right flank : TGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATACCCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGTAAAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATTATGGAATACCGGTATGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //