Array 1 61135-63143 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJI01000022.1 Vibrio cholerae strain 4874 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61135 28 100.0 32 ............................ GTATTGCGGTTTCTCCACACCGCCTCATTCGT 61195 28 100.0 32 ............................ TTATCATTCTAGCCTTATAAGGCTAGTTTTTA 61255 28 100.0 32 ............................ GAAAATCTCACAATCTCATCAGCAATGGGTTT 61315 28 100.0 32 ............................ ACCAGCTTCATTTGGTAGTGGGTAGAAAGTTA 61375 28 100.0 32 ............................ AGCAATTAAAGCAGGTTCCACGCAATTTACAG 61435 28 100.0 32 ............................ CTTTTTGCTTTGCAAAAACAGGTGCATTTTGT 61495 28 100.0 32 ............................ ATCACGAACAAAGCGCAAGGTTTCTGCGATAA 61555 28 100.0 32 ............................ TGTAAAATTTTCGCCAGACCGTGATTTCTCAG 61615 28 100.0 32 ............................ AGCAAAGATTTTGCAGAGAGAGGGGGTTAAAT 61675 28 100.0 32 ............................ TCATGAACCTCTAACGTGCCATCGGTCAGCAT 61735 28 100.0 32 ............................ TCGCAAGAAACTTTCACTAGGGCGTTAAGTCG 61795 28 100.0 32 ............................ TCACTAATGACAATACTTTTGAATTCCTCAAA 61855 28 100.0 32 ............................ TGCGGAACCTGTTTTGTTCAGAATTCCATTGA 61915 28 100.0 32 ............................ TAAATGAGGTTCGCGAACCCGACATAAGGGAT 61975 28 100.0 32 ............................ AAGACGTTTTCCCAAACCCACAAACAGACGTT 62035 28 100.0 32 ............................ GAAGTCAGGTTGTGTTATTGGACCCGTCCGCA 62095 28 100.0 32 ............................ GCATCTATCGGCCAAGGCTCTCTGGCTTAATT 62155 28 100.0 32 ............................ TTGCTTGGTGATCGTTATGACAACGGGAAAGA 62215 28 100.0 32 ............................ TAGTTTCGGCGGCAAGGTAGAAACCATAAATA 62275 28 100.0 32 ............................ ATTCCAACCTATGGCAAAAACCGTCCCGCTGC 62335 28 100.0 32 ............................ TTCAAGAGAGTTATAAGAAGCACTACCTTGTT 62395 28 100.0 32 ............................ GCACACCCATCTTGCGGGGTTTGATTGGTCAA 62455 28 100.0 32 ............................ CTACACTCTTGCAACTTTACAATCAGACTGTG 62515 28 100.0 32 ............................ ATATAGTGCGCTTGGGGATAATTAAAGTTCAA 62575 28 100.0 32 ............................ TATATGGATAATGTAGCCGCTTTTCTTTTTAA 62635 28 100.0 32 ............................ TCGATCAATGGCGATTTGCTTTAGCTTCTTCA 62695 28 100.0 32 ............................ TGATTCTGGATTCAATCGAAAGTGCTTTTTCT 62755 28 100.0 32 ............................ TAATGCATGTGTCACAAGGCCAACAACCCCCG 62815 28 100.0 32 ............................ TTTATTCGCCACAACTTGAAAGCTGTCAGTTT 62875 28 100.0 32 ............................ AGCAACCAAGCAGTAAACGATGCATTTTGCCA 62935 28 100.0 32 ............................ TGACCGTTATCTGAATCCGTACTGACGTAATC 62995 28 100.0 32 ............................ ACGGTGAAATGGGTGGTTCATCCAAAGGGTTT 63055 28 100.0 32 ............................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 63115 28 92.9 0 ......................G.A... | T [63135] ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGGGCCGTTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCCTATAGTTGGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGAAGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGACACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGACTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55965-52153 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJI01000023.1 Vibrio cholerae strain 4874 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55964 28 100.0 32 ............................ TTCTTAAAGCATCACTGTATCTGTTTGAGTAC 55904 28 100.0 33 ............................ TGCGGCAGTTTATGCTGTTAGTGAACTTGATAT 55843 28 100.0 32 ............................ TCGGTCAAAGTCGATGTGTTGACCGTCGATGT 55783 28 100.0 32 ............................ GCTATTGATGGCCTTGCCGACAAGTTAAAACT 55723 28 100.0 32 ............................ TCTAAACGTGGCATCGAGCTAACCCAACGCGA 55663 28 100.0 33 ............................ TGTGGGAAGGTGACTCGACTGTTATCTCTCCAG 55602 28 100.0 32 ............................ AATGCGCAATCTCCGGTAGATAAATCGGGCTC 55542 28 100.0 32 ............................ ACTCGCTTGCTTTAGCACGATTTAAATAAAGC 55482 28 100.0 32 ............................ GCAGAGTTTAACAGTCAGGTTGATAAGGTTGA 55422 28 100.0 32 ............................ AGTTAATGATATTGCTGCTAGGATGGTTGATA 55362 28 100.0 32 ............................ TATTTCATCGCTGCTTACACAGTGAAGTCTAG 55302 28 100.0 32 ............................ AGTGTTGAAACACGTTTGGCGACTTGCTATCC 55242 28 100.0 32 ............................ TTTCTCATGCGCTTATGCACTTCTGGCAATCG 55182 28 100.0 33 ............................ AATAACGGTGAAACCAAACGTACCTCGTTGATT 55121 28 100.0 32 ............................ TTACGACGATAAAGGTGTCGCTTAATGTTTCT 55061 28 100.0 32 ............................ CCAGCCAGAATTAGGTGAAACACGGTTAAATT 55001 28 100.0 32 ............................ TAATCGGAGCAATCCTAACTGGCGCAGTCGCC 54941 28 100.0 32 ............................ ATGCCAACGCCCTTCATCGGCAGAGCGCAGCA 54881 28 100.0 32 ............................ ACGATTTGATTTCGTTAATGCTAATGTGCTTC 54821 28 100.0 32 ............................ TTAACGCTAAACGCAACGTTTCTTCTGAACCG 54761 28 100.0 32 ............................ TTAAAAACAACGCAGAGATGGTACGTTTACAA 54701 28 100.0 32 ............................ CACCGCGCTTTTTGCCCCTTTTGTGGCTTCAA 54641 28 100.0 32 ............................ GTTGACCGTATTGAAATTCCTGATGGTCGATA 54581 28 100.0 32 ............................ ACAACGTCAAACAGGAAGCCGAAAAAAATGAA 54521 28 100.0 32 ............................ TATTATGGAAAATAGTTGAGGAAACCGCAGTT 54461 28 100.0 32 ............................ TTGGACTCGTGTCACTAACTGTCGCCATATTT 54401 28 100.0 32 ............................ TGCGCGAAACTTGCCCAACGCTAGCGCGTTGG 54341 28 100.0 33 ............................ CTCATAAAAACATTTCTCTGCATACTTGGCGTC 54280 28 100.0 32 ............................ ATCTATGATGGTAGTCTGATCTAAATCTACTG 54220 28 100.0 32 ............................ AACGTTGGTTACAAAATTTACGCGCATAAAAA 54160 28 100.0 32 ............................ AGATGTGTCTGCTGCTATTAACCAAGCATTGC 54100 28 100.0 32 ............................ GCAAAGTCATTCAATAAATCATCTGAGCATGA 54040 28 100.0 32 ............................ GCCGATCATGCGCGCCGCATTCGATAGCCATG 53980 28 100.0 32 ............................ AACAACGCCGCAGCGAACAGGAGATAAAAATG 53920 28 100.0 32 ............................ CGACGAAGCAAGCAACGCGATCACAGAGTTTG 53860 28 100.0 32 ............................ AATAAACACGCCAAACGATGCGCCGATAGCCT 53800 28 100.0 32 ............................ CATACACGATGGTTAAGTGGATGGCTCAAGGT 53740 28 100.0 33 ............................ GGGTCTAATCGCTTGCAGTGAACAACGTGCTCA 53679 28 100.0 32 ............................ GTACTCTAAAAGTTAATATTCGTCGGCGTTGC 53619 28 100.0 32 ............................ CGCAGGCAGCACCAGCCCTTACCAAACCAAAA 53559 28 100.0 32 ............................ CGCGCAGACGTACTTAATTTTTATCACCTCGA 53499 28 100.0 32 ............................ ATCCTCAGCCCACCAGTTGCGTTGCTGCTCAG 53439 28 100.0 32 ............................ ATTTGTATCTCCTATCGTTAAACTTCCAATAA 53379 28 100.0 32 ............................ CGACGTGGTGCTGACTGACGTTACGTTATCCA 53319 28 100.0 32 ............................ ATAAACGGAGCAGCTTTCTCGGCTAGAGCATC 53259 28 100.0 31 ............................ TTTGGGAAAAGCTCCCGCTTGGCTTTTTTAA 53200 28 100.0 32 ............................ TTAGTTCTGCTCTAACATGGCCTCGATGCCAG 53140 28 100.0 32 ............................ TGTCGGCTTGTCGGATTTGCACCGTCTAATTT 53080 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 53020 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 52960 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 52900 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 52840 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 52780 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 52720 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 52660 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 52600 28 100.0 32 ............................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 52540 28 96.4 32 ...........T................ GACATCCGAGAGTCTATTGCCGAGTGGCGCAC 52480 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 52420 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 52360 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 52300 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 52240 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 52180 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21434-21226 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJI01000009.1 Vibrio cholerae strain 4874 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21433 28 100.0 33 ............................ CGACAAAGAGCTTGATGCTCTGGCTGAGCAAGC 21372 28 100.0 32 ............................ AAGCCGCTGACAACTTTGTGTTGCAGGGCGAA 21312 28 100.0 32 ............................ TTCAAATTGTCACCATTTTGAAGAAGCCATGA 21252 27 85.7 0 .............T......A.T-.... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTTCACCGCCGCACAGGCAGCTGATAAT # Left flank : TTCTGAAATGACAGCGCTTGGATACCTAAACATATCGCAGTCAAAATCGGTTCCTGAACAATACAATTTGGCTGTTTTCCGGCGCAATCAAAAAATCGACCAAGCGACACCGAATGGACAAAGAATCAGAGCCGAACGTTTGGCTAAACGAGCTATGAATAGAGGCGATTCACCGATTCGGTTTACCCCAGAAGACCTCGTATTCGAACATTATCATTCTATACCGATAACAAGTACCCGTAGTGGCAAATCATTCAGGCTAAATTTGCAATATCAACGACTAGATACAGTTCCAGATGGACAATGGGCATTTTCAAGTTATGGGTTAGCAAATCAAGAGCTTGAAAGTAGTCCTGTTCCCGTAATTTGACCAATTTAATATTCATACTCGATAGACATCTGATTTGTAAACAAAAAAATTAACCATTAAAATAAAAGGTATTATTTTTCTTTACCGATTAACAGATTGATAAACATACACTATATTGAAATTGACCATT # Right flank : TCACAAATAGCCTTTTAAAGGCTATTTGATTTCAGCATTAATAAGGATTATAATCCTCATTAATGCTGAAAAAGTATTTGATAAAAAACGTACCACGTTCATTCGAGTTCAAGATCAGACACTGCTGAATAAGTAGATATTAGGAAGATTGTGATTAGTGTTAAAAATAGTGGGATCAGAACCTAAAACAGATCTCACTATTTAGTCGAACCGCTACCGATATTTTAAGGTAACAAGTCTCGAACATCACACCGGAGAACTTCAGCTATTTGATAGGCCTTTTCGAGTGTGATGTTCACTTCTCCCCTTTCGATACGACCAACATAACTGCGATCGATATCTGCAGATAGAGCAAGTTTGTCTTGAGAAATACCTTTGTCTTTACGCATCGAACGGACATTGTGTCCAAATTTTTTCGCTAAGTCTTTCATTTCCAATACACATTAAAAAGAAAGACTATCCGTTCTTGATGCATACATTACCACGGACTATAATCCGCA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCAGCTGATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //