Array 1 34712-32164 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDX01000007.1 Butyricicoccus sp. AF35-5AC AF35-5AC.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 34711 32 100.0 33 ................................ GCATCACTGCCGTCGCTACACTTACCCGCAAAC 34646 32 100.0 33 ................................ TTAACTGACATTTGCGAGTTATCCCAGTAATAG 34581 32 100.0 37 ................................ GATGTACTTCCGCAGCTCTTTTCCGCTCAAGCCGCAC 34512 32 96.9 34 ............A................... GCTGCGTGTCGTTTTGCCGTTTTCCGTAATCTCG 34446 32 100.0 34 ................................ AAGCGAAAAGTGAAGATTGAGCTTGCGAAGCGTG 34380 32 100.0 35 ................................ ACGCAGTCCACACATATACAACAGTTACATTTCTC 34313 32 100.0 33 ................................ ACTGGCTAAGGGTGCGCTGCGTGTCGGTAAGGA 34248 32 100.0 35 ................................ GATAAATGGTTTTGACTGTTGTTCACGCTATCTGC 34181 32 100.0 33 ................................ ATTATTCAAAAGTTTCTTCCAGCGGCTGCGTAT 34116 32 100.0 36 ................................ TATGGTAAGTAATTTTTTGAGCCGAAAAGGCGGGAG 34048 32 100.0 34 ................................ ATTTTTTACCTCCGTTTGTCCCCATGAGCCAATC 33982 32 100.0 35 ................................ GGTTTGTCGGTATCCGTCCCCTCGCCCGGCTTGCT 33915 32 100.0 35 ................................ GCGCTTGTGATGCGCTGCTTGACCTTGCCGCAAAC 33848 32 100.0 34 ................................ AAATTGGACACCGTTTCAAAGTCGGTTTCGGACA 33782 32 100.0 33 ................................ TGCAAGGCAGTGAGCTGCTGGTTTTAGATTCTT 33717 32 100.0 35 ................................ TTCTCCGTTACACCATCGCAAGTTACGCGATTTGG 33650 32 100.0 34 ................................ ATTGGTCGTGTTGCTGGTATCAAGCTGGTTATGA 33584 32 100.0 33 ................................ GTGACCGTGCCGGGGCCGAACGCGAGGATTGGT 33519 32 100.0 33 ................................ GCCGGTTTCCCTGGTCACGCGCTCCACAACCTT 33454 32 100.0 34 ................................ ATCCTTGCGGTCGAAAAACCGCTTTTTGAGCCAG 33388 32 100.0 34 ................................ CGTCCTGATGATTAGGTATGCTTATCGCAAGAGA 33322 32 100.0 33 ................................ CGAACAGCCATCCTGCATATTTACGCTGCAGCT 33257 32 100.0 34 ................................ GCGTTACTGCGAGGTAGATTTGGATACTAACGAG 33191 32 96.9 35 ............A................... TTCTTGCCTGTCCACCGGACGGCCTCAATCACAAC 33124 32 96.9 34 ............A................... CTTGATTTTCATTGTTTTACCACCTTTCAAACAG 33058 32 96.9 36 ............A................... GTCGTGTCCAGCTCCTCGTACTTGTGCAGCCGTCCA 32990 32 96.9 34 ............A................... GATGAAGGTGATGCCGTAGGTGATACCGATAGCA 32924 32 96.9 35 ............A................... AAGTACCTGTGGCGACACCGGGAGAAGAATGAAGT 32857 32 100.0 37 ................................ CGTGTGAAGTTAGATACTCAGTATTTTAAGGTTGATC 32788 32 96.9 34 .......T........................ TGTTGCTTATGCTGGATTGCTGGTCGGTACGGTG 32722 32 100.0 32 ................................ CTCACCGACTACAAGGCACAGCTGAATGCCTA 32658 32 100.0 35 ................................ GCCAACTGGACGCGCCGCCTGCGTGATGAGCAGGG 32591 32 100.0 34 ................................ TACGAGAAGATGCGGAAACTCTATGCCCTCACGA 32525 32 96.9 33 ...........T.................... TGCATCAAGCGGTGCTACCATTCTTCCACCTCC 32460 32 100.0 35 ................................ GGAAGATTGCCGCCATAGCGGTCTGGGATGCAGCT 32393 32 96.9 33 ............A................... CGTAAATTTGGGTGGTTGCTATATTCTCGTGGC 32328 32 100.0 34 ................................ TCGTAGCGGTTGGTGCTCAGACCAACAGTTTCGC 32262 32 96.9 35 ............A................... TTCTGCAAGGCAGATCGTGTGCTCGGTCACTACGC 32195 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.1 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : GCACAGAAAGCCGCGGCGACCTGCTGATTGTTCGTGCCATGCGTATCCATTCGGCGGTACTCGGTGTGTCCGGTGAATGCGATGTGGTAGAATTTCATCGCTCGGAAAACGGCGTTACCCTGCAGGGACGAGACGGACTGTGGTCGCCGTTTCCAATCGAATACAAGCGCGGCAAGCCCAAGCCGCACGACGCGGACGAGCTGCAGCTGTGCGCTCAGGCGATGTGTCTTGAGGAAATGCTGTGCTGTCAGATTTCCGACGGTGCGCTGTTCTACGGTGAGCCGCGCCGACGGACGCCGGTTGCATTTACAGACGAACTGCGTCAGCGTGTGCGCGACAGCCTTGCCGAAATGCACGACTATCTGCGCCGCGGCTGCACGCCTAAGGTAAAACCGCAGAAAGGCTGCTCGGCCTGCTCGCTCAAGGAATTGTGTTTGCCCGAGCTGATGAAGGCGAAACCTGTCTCCGGCGCTCATGGGCGCGTGCGCAATCGTCAATCG # Right flank : GAGGTATACGAGATTGCCGCGCCGGAGGGTTATGTCGCTCCCTTCGCGGAGCGACACAGATAGCCGCATCGCCTCCCTCCCGTCCAACCTCGCCCCGGTCCCCATCCCTCACAATCTTTCACCCACCCCGACCAAAACATTTGCACATGTCATGACACATGTGCTATAATAACTCCAATACCGCTATTGACAGCGCCGCACAGATTGCTGCGGCGTTTTGCCGGGGAAGGAGAAAAATCAAATGAAAGCATACTTTGACAGCATCGAAAAGGAGGTTCCGGAGCAATTACAGCAGGTTTTCCTTAATCGCCGCGATACGGCTGTCATTACGATCGACATGCACGATGGACACCTGTCAACCGATCCGGACTGTCCATGTCCGTCTCCGCGAGGACGTGAGATCATCGAACCGCTCAATCATTTCATGAACGAAGCACGCGCGCTCGGTCTGCCAATCATCCATGTCCGCTCAACGCTGCGTAAGGGCGGTGCAGACGAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20626-21061 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDX01000012.1 Butyricicoccus sp. AF35-5AC AF35-5AC.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20626 32 96.9 35 ...............T................ GTCATCATGCTGATGTAGTCCACCTGCGCAGCGAG 20693 32 93.8 34 A..........C.................... ACGATTGCGAGAGGCATTGTCTCGTACATTTCGC 20759 32 100.0 37 ................................ CCCGCGTAAGTGTAATCACCATACTGATAGGTAGCAC 20828 32 100.0 35 ................................ GTTAAAACCGTCCATGTCCGCGCCGGTGTCGAATG 20895 32 100.0 34 ................................ ATAGAAATAATCCACTTGTTTTTTCGTGAACGGT 20961 32 100.0 37 ................................ TCCTTAGCAACCTCTGTGCCAGAACCCATTGCAAAAC 21030 32 90.6 0 ...........................AA..G | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 97.3 36 GAAACATTTCATACCCCTATGGGGACAGCAAC # Left flank : CGTGCCGAGCACATACGACCCGGGCTTTACGCCGGTTTCCTCCGAGAAGGACTTCATTTCCTGGGGTGCGAACAACGCTTTCTACGAAGGAAATGTCGTGGACGGCATGGTAGCCGGTAAGGATTTTCGCAAGGTAAAGAGCGGGTTCAGCACCGACACCAGCGGCGAGATCAAGAGCTTTTTTGTCGAGGTGGAGTATCTGGACGCGCAGTCGTAAGACAAACAGGCGATAACCCAATAGGATTAGTTGAACGAAGAACCGAGGGCTGTTCCGGCGTATGCAATAGGAATGGCCCTCGGGTCCTTTGGTTGCGTTGGTGCGAACCGCGTGATATAATATTATTCAAGAGATGGTTTGGGGCAGGTTTGCACCGCAATAAACGGCTAATTTTATCGGTAATAGCGCTGTAATATCAAATTTTTGCAGTGATTATTATAACAAGTTACAGAAAAAACAGCTGAATAACTGAATTACTTCGTTATTTTTATGCTGTTTTGCC # Right flank : GAAAACCGATATGTCCAATTGGACATATCGGTTTTTACTTTATCCGCTATTGTTATTTACATGTTACGCCGCCCATACCGAGCGCCGTTTTAATGCCGACGCCCGCATATGGTGCAAAGTGCAGCAGCAGATTCGCCATCGTAAGATGAAACCCATCCAGACGGCATTTAAGCGTCAGCTCTCCGGTGAATCCGGGAATGGACTGTCCTTTGAGCAGATAATCACGGCTCGACAGCCGGTACTCGGCAATGCGAAGTCCGTTTGCGATCGCCTGAATGCCTTCGCCGTCCTCGTCCTCGATCGGACAGACCTCCGCAAAACAGCCGTTCCACTTGTTCAGCAGATTTCGCATAATGAGCGGCACGGACGGCAGATTGACATAGCTGCCATCACTTTTGAACGTGGTCGGCGTGAGAAACCGCAGCTTCATTGTGCGGTGCTCGGGCAGCTGCAGCAGTGTGTCCGCCGAATCAATATGCTCAATCTGCATCGTGTTGACA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACATTTCATACCCCTATGGGGACAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 34448-34010 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDX01000012.1 Butyricicoccus sp. AF35-5AC AF35-5AC.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 34447 33 97.0 35 ......G.......................... GTCAGTTCGCTGAAGAGAGGCTTCAGTGCGCTAAA 34379 33 100.0 35 ................................. TCGGTGTGTTGATGGTTTGTTATCGGTGTGTTATC 34311 33 100.0 33 ................................. TCTGCGCTACACCAAATTCGGCATTAGGAAGCT 34245 33 93.9 38 ......GT......................... GAGAGCAGCGGGTTGCTTTCGTGATTAGCGAAGTTATC 34174 33 97.0 33 ......G.......................... TCAGCGGAATGTGATAGTTGATAATCTTCTTTT 34108 33 100.0 34 ................................. GCGTGGTCTGGAGCTTGTAGCTAACCTCGTTCAT 34041 32 87.9 0 ..................TT.....-......A | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 96.5 35 GTAACAACTCGCGCCCCTGCGGGGGACAGCAAC # Left flank : CGAGCTTGGTGACGATGAGCACATCGCCTTTTCGTAGCTGCGCCCGCAGCCTGTCGAACTCCGGGCGCTCGATCTTCGTGCCGGTGAAGGTGTCTGTATAGATTTTTTCCGCGCCCGCCGCCGTCAGCGCCGCCTGCTGCGCGTCCAGACTGTTGCCGTCGCGTGCCTGCGTTTTGGTGGATACTCTCGCGTAGCCGAATGTCATGTAAATTCCCCCGTTTTCCCGGTTTTGACACCGCGAGTTTTGAATATATGTTTTGATACCCATATTATAGCTTATGCCACCGGGTTTTGCAACCGGTGGCAATACTTGAAGGTTTTGAGACCGGTTGATTTGGTGCGAACCTCGTGTTATAATAACAGTAAATAAGGTTGTTACAGGCAGGTTCGCACCGGGGAAAACCGACAATATCACGAATGGATACGCAAAAATACAGAAGATAATACAAAAAGATTGTAGGAATGACGAAAATCCGCATTGTATTTTTCGCATTTTTGCC # Right flank : AACCGATCTGTCAATTTTGACAGGTCGGTTTTATTTTTTTGCCCGAACTGTGAAAACCCCGCCCCTCCCACCGATAACATTGTGTAAGGCAAAGAACCTTCTCAAAAAAATTTTTTCGGGAAGTGTGAAAACCGCCGAAAAATTTCTGATATATAAGCAGAAGGATTTCAAAGGACAGGAGGTGAACCGAATGTTTGTAATCCGTGAGCCGTGGCTGGATTTTCCGCTGTTCGGCGAGGACAATCCGCTCCTCGACTGGGTGAAAGACACCATCTGCTACTAAGCAGACCTAAATCCACAGCAGGGGAGGTGAAAAATTGAAAACCGTGTTATGGATATCGCGCCACGCCATGACCGAACCGCAGCTGCGCGACCTTGCGCGCGTGCTGGGCGATACGGTACAGGTGCTGCCGTACACCCAAACCGTAAAACAGGCGGACGTACTGCGCCCGCTGATCGAGCAGGCGGATGCAATCGCCGCCGTACTGCCGGTGGAACTG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACTCGCGCCCCTGCGGGGGACAGCAAC # Alternate repeat : GTAACAGCTCGCGCCCCTGCGGGGGACAGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //