Array 1 29-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTQ01000296.1 Treponema pedis isoM1220 segment295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 .................................... ACATCTTATTGAATATGTGGAGGACTTGGA 95 36 100.0 30 .................................... CTTATAACTAATATATCGTCTCCAACTCTA 161 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTTTAGTC 227 36 100.0 30 .................................... TTGTTGATATACTTTACTACTGTCAGAACT 293 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : CACATGACGTCGTGCTTTACGACGTCTAG # Right flank : TGTGAATGGTGTAAACCTATACCCAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGATTTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGCGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCTGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 54-484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTQ01000716.1 Treponema pedis isoM1220 segment726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54 36 100.0 30 .................................... TAAGGCTTCATACAGGTATTTTGGCAACAA 120 36 100.0 30 .................................... GCGCAAGCGTAAATGTCGAAAAGGCGTTTT 186 36 100.0 30 .................................... ATTACCGAAAAACACAGTGAAGGTAAAAAG 252 36 100.0 29 .................................... TTATAATCATTCCTTTAATGCGGCGCCTG 317 36 100.0 30 .................................... ACTCCGATTTTGAAAGGTTTCCAAATTTGA 383 36 100.0 30 .................................... CACACATGACGTCGTGCTTTACGACGTCTA 449 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TTTCTTTTTAAAAAGTGATATAATGGCGGGCAATATAGGGAGTGGCTTCATTGG # Right flank : ACATCTTATTGAATATGTGGAGGACTTGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4579-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTQ01000537.1 Treponema pedis isoM1220 segment536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 4578 36 100.0 30 .................................... GAAAGGTTTACCCTTTCAACTCACCCCGTA 4512 36 100.0 30 .................................... AATTTGCAGAACACGAAAGCCGGTTAAACA 4446 36 100.0 30 .................................... TTGGCGTCCGAAAGGGCAAGTTCTTCTTCC 4380 36 100.0 30 .................................... AAAAAGCAAAAATTGAAGCGGCTTACGACA 4314 36 100.0 30 .................................... TCGGATTATATTACTAAATTTAGAGTACCT 4248 36 97.2 29 ....................C............... TGACAGGAATTAATTCATCTGGAATATTA 4183 36 100.0 31 .................................... TAGTAATATAATCAGAATGCAAAGCTTTCGC 4116 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 4050 36 100.0 31 .................................... ATATAAGGAGTTTAATATATGGACCCGTTAA 3983 36 100.0 30 .................................... GTACTTATAATACTTAAGAAGGTCATCACG 3917 36 100.0 30 .................................... TCTTGATAGGGGAGATGTGCGAACGAGGGC 3851 36 100.0 30 .................................... AACTGAATATGAAGGTGGCTCTGTTACTTC 3785 36 100.0 30 .................................... CAGAAGGAGATAAAGCAGCACCAGAATAAG 3719 36 100.0 30 .................................... GTATTTATAGTATTTGAGCAAGTCATCACG 3653 36 100.0 30 .................................... GCAGGAGAAATTAAACTTGTTGGAAGTTAG 3587 36 100.0 30 .................................... GTTTATCCCCTCAACTCGCCCCGCAGGGCT 3521 36 100.0 30 .................................... ACGCCTTACGAATATCTAAAGCATCAGCTT 3455 36 100.0 30 .................................... AGATTTGCAAAACAAACTGCGTTTGAATTA 3389 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 3323 36 100.0 30 .................................... AAAATAGAAAGAAAAATTAACCTTGTCGAG 3257 36 100.0 29 .................................... GTTTGAATATTCCATAAAGCACTTTCTGG 3192 36 100.0 30 .................................... ATTTTTTGTTGAAGTTTATTTATTGTATTT 3126 36 100.0 30 .................................... CTTTAATCCATTTATCTACCGTATTTATAG 3060 36 100.0 30 .................................... CCTATCTTTTGATAGGCTTCAAGAGTGCCT 2994 36 100.0 30 .................................... ATGTAAAGTCGTTTTTTAAAGTCCCGTATA 2928 36 100.0 29 .................................... GGCGGGCAATATAGGGAGTGGCTTCATTG 2863 36 100.0 30 .................................... TAAGGCTTCATACAGGTATTTTGGCAACAA 2797 36 100.0 30 .................................... GCGCAAGCGTAAATGTCGAAAAGGCGTTTT 2731 36 100.0 30 .................................... TTTAAATATCAAAATGCTATCTGACTTACA 2665 36 100.0 29 .................................... TGAGGGCTATTTTTTTAACTATAATATAG 2600 36 100.0 30 .................................... AGCAGCGGAAGAAATTGCACGCAAGGCGGC 2534 36 100.0 30 .................................... TCTAATCGCCATAATACACCTCCTTAAAAA 2468 36 100.0 30 .................................... ACATTCCGCCGCTGTCCAACCCGCCGAAGT 2402 36 100.0 30 .................................... GCACATCGGAAGGGAGTCGTTCCAGCATGT 2336 36 100.0 30 .................................... CTTGATTTTTATCGCATAAAACGATACACT 2270 36 100.0 30 .................................... TTTGAATGGCCGCGATTTTAGCCATTGCGT 2204 36 100.0 30 .................................... ACAAAAAAGAGCTCTCAAAAGTAAAAGCAA 2138 36 100.0 29 .................................... GAAGAGGAGTATAACAAGCGGCTTACGGA 2073 36 100.0 30 .................................... CAGATCTAGCTAAAACCGGCGATATTATCT 2007 36 100.0 30 .................................... GTCATACACTGCTTTATCCTGCTTTTTTAC 1941 36 100.0 30 .................................... CCACGTTGCCGATAAGGCAGGGCCGTTGTA 1875 36 100.0 30 .................................... CCACGCTGCCTATACGGCAATGCCGTTGTA 1809 36 100.0 30 .................................... AAAATTCAGAAATGACACTGTTAGAGATTA 1743 36 100.0 30 .................................... TCGCGGAGCCATTGTCGATTGATTCCACCA 1677 36 100.0 30 .................................... ATGGTGACAATTAAATGACTTGTCTTAATC 1611 36 100.0 32 .................................... CCCAGCCCATTCGCTTCCGTCAGGTGCTTTTT 1543 36 100.0 31 .................................... AAACTTATATCATGCCTTCAAAAACACCGGC 1476 36 100.0 30 .................................... ATATAAACAAGGTTTACTTGCAAGTGCTCC 1410 36 100.0 30 .................................... TGCGTCCAAAATCGTATCTCTCATTCCTGA 1344 36 100.0 30 .................................... AGGAAAAGAAAAACTAAAAGAGAGTTTTTA 1278 36 100.0 30 .................................... GAGTTCCTCCTTAATATCAACATCGGTTTT 1212 36 100.0 31 .................................... CTTAGAACGTCAACGGCGTTGAATAAGCCGG 1145 36 100.0 30 .................................... TTGGGCTCCCAACGGGGGAGGGTGCCTGTT 1079 36 100.0 30 .................................... TTCGATTCTTTTATGTTAGCTTTCATCGTA 1013 36 100.0 30 .................................... AAAAAGGATTCGGATTTCGATAACAATCAA 947 36 100.0 30 .................................... TAATAAGAACAAAAGAAACACATAAATTTA 881 36 100.0 30 .................................... CTCCGGAAGACAACCCCGACGCTGACGCTT 815 36 100.0 30 .................................... ACACACAGACGGCGAGCTTGCCGCTTATGA 749 36 100.0 30 .................................... GTATACCAATCTTCTTTGAGATATCATTGT 683 36 97.2 30 ..........................A......... GTCGGTTCCGCAGATATAAAGCGTCTCAAA 617 36 100.0 30 .................................... TCTGCAGCAAAATGCTAATTAAAGAGCCTA 551 36 100.0 30 .................................... CGGCCAGCTTATTACGCCTGTTGCCATAAA 485 36 100.0 30 .................................... GCCGAATATAATTTGATTTTTTGACACTCT 419 36 100.0 30 .................................... AAAATTAGGCATCTTATTATTTTAACTCCT 353 36 100.0 30 .................................... AAGAGCTGTCGATGCGTATTCAAGATGTTC 287 36 100.0 30 .................................... GCTGGCGGCGGGCTATCTCCTTCTTGGACT 221 36 100.0 30 .................................... TTTAAATATCAAAATGCTATCTGACTTACA 155 36 100.0 29 .................................... TGAGGGCTATTTTTTTAACTATAATATAG 90 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 69 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : AAAAGTGATATAATTCTTCCAATTGGTGAAGATGAGCGAATAG # Right flank : TAGCAGCGGAAGAAATTGCACGCAAGGCGGCGTTGTGATTTGATTTCTTTTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 8-901 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTQ01000721.1 Treponema pedis isoM1220 segment731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 .................................... AATTTGCAGAACACGAAAGCCGGTTAAACA 74 36 100.0 30 .................................... TTGGCGTCCGAAAGGGCAAGTTCTTCTTCC 140 36 100.0 30 .................................... AAAAAGCAAAAATTGAAGCGGCTTACGACA 206 36 100.0 30 .................................... TAAACTCCTGGAGGTATAGTCATCTCACGC 272 36 100.0 30 .................................... CGCTCATAATCGCATAACGTGTTTCATCAT 338 36 100.0 30 .................................... AAGCCGAAAAAATACTTGCCCCCACTTGTT 404 36 100.0 30 .................................... AAAAGCTGTGTGCGGATACAGAATAGGTGA 470 36 100.0 30 .................................... CTCCGGAAGACAACCCCGACGCTGACGCTT 536 36 100.0 30 .................................... ACACACAGACGGCGAGCTTGCCGCTTATGA 602 36 100.0 30 .................................... GTATACCAATCTTCTTTGAGATATCATTGT 668 36 100.0 30 .................................... CCACGTTTCCTATACGTCTATGCTGTTGTA 734 36 100.0 30 .................................... AAAATTCAGAAATGACACTGTTAGATATTA 800 36 100.0 30 .................................... TCGCGGAGCCATTGTCGATTGATTCCACCA 866 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : CCCCGTAG # Right flank : ATGGTGACAATTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 22714-23145 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTQ01000078.1 Treponema pedis isoM1220 segment77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22714 36 94.4 30 A...........................A....... AAATGAAGCACAATTCTTTATTGAATATCA 22780 36 100.0 30 .................................... TCGTGATGTTCGGGGTGATGAGAATTATTA 22846 36 100.0 30 .................................... TTATAGACAAGGACGATTACAAGTATATGG 22912 36 100.0 30 .................................... CACGGCGTTGCCAATTCCAGACAGTTTTTA 22978 36 100.0 30 .................................... TCTTCCAATTGGTGAAGATGAGCGAATAGA 23044 36 100.0 30 .................................... GAAAGGTTTACCCTTTCAACTCACCCCGTA 23110 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATCTTTTATATCCAATCTTAATGTTGAAAATCTTTTATTCATATTGATACCATATTCACTATTTTAGTCTACTTTCAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGAAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGAGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAATACTCATATTGCTAAATTTCGATTTGTTTATAGAAATGGATAAATTACGGCTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTGCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTACAGCCTGCTTTCTTTCATCTTATGCTCCTATCCCAGGAGACACAAACTTTCCAAGTTCACCTTGAAATTGGTTTAGTGTATATGTT # Right flank : AATTTGCAGAACACGAAAGCCGGTTAAACAGTTGTGATTTGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.08%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //