Array 1 54-7715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQPF01000164.1 Mycobacterium lacus strain DSM 44577 contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 54 24 100.0 37 ........................ TTCCCCACTCTGGGTTGTCCAGTAGCTCGGCTAGTGC 115 24 100.0 37 ........................ CGCAACCTGCCCGCTGTTGAGTGGACCGAATGAGTGC 176 24 100.0 37 ........................ CACCTCTTGCGTCCGCATGGATCCTGCTATAGAGTGC 237 24 100.0 37 ........................ GAAACAAGTGATCAAAAAAATAATCGCGCGTTTGTGC 298 24 100.0 37 ........................ GCTGCGCGGGCTGTCGCGGAAATTGCCCAACGCGTGC 359 24 100.0 37 ........................ GTTATGGCCACCAACGGGAGACGGTGGAGGCGGGTGC 420 24 100.0 37 ........................ CCAGCGAAGCACAGGTTAATTGACCGGTTGTTTGTGC 481 24 100.0 37 ........................ TGTCGCCATCACGGATCTGTAAAACGACATTGTGTGC 542 24 100.0 37 ........................ CGCGTCCTTAGCTGACACACCAGGCAATGTCAAGTGC 603 24 100.0 37 ........................ CTGTATATGTAGCTATCAAAAGAGGGGGGAGACGTGC 664 24 100.0 37 ........................ TCCCCACTGGTGGTACACCGACTGACGATGCACGTGC 725 24 100.0 37 ........................ TCACCCCATACATGCGGTCCTCGATGAACGCACGTGC 786 24 100.0 37 ........................ CAGGAAGCGGCCGGCAACGTTCGCGGACCGTGCGTGC 847 24 100.0 37 ........................ CAGCGCGAGAGGCAGCACACCACCTCATCCCTGGTGC 908 24 100.0 37 ........................ GCGCACGCCACAGCGCGTCGAGGCGCTCACTGTGTGC 969 24 100.0 38 ........................ TTAGCGATATCGTCGAGGAGGTAGAAGACCATGAGTGC 1031 24 100.0 37 ........................ CCGCGTAGACAACAGCAACACCAACGGGTTAGGGTGC 1092 24 100.0 37 ........................ CATGATTGCCGCTTGCACGCCTGACATGCTCGGGTGC 1153 24 100.0 37 ........................ GCTTTACACGTTACTCGACATCCTCATCTGCGAGTGC 1214 24 100.0 37 ........................ GTAGCCCCTGCTCGATGTCCCTCTGTCGGATTTGTGC 1275 24 100.0 37 ........................ GCGTGGTGCTTACTAGCGTTGTCAAGGCGGCTGGTGC 1336 24 100.0 37 ........................ CCGTCAACTGATCGAGGAACTCCCCGAATGAACGTGC 1397 24 100.0 37 ........................ TTGGAGGCACTTGAGGGGCATCAACGAACCATTGTGC 1458 24 100.0 37 ........................ GGCACTCGACCCGGAGGCACTCGACCCAGATGCGTGC 1519 24 100.0 37 ........................ CCATCCTCCAACGGATACGCAAAGGGCTCTTTAGTGC 1580 24 100.0 37 ........................ GTCGTCGTCGGCCCCGACGGGGGGGTGTACTTCGTGC 1641 24 100.0 37 ........................ CTCCACCTCATACGGAGGGTCGACCAGGACACCGTGC 1702 24 100.0 37 ........................ TCCAGAGGCTGGAATCTCCAAATCGCTGAAGCCGTGC 1763 24 100.0 37 ........................ GTTCTGGGTAGGATTCCCAGCAGTCGATGCAGGGTGC 1824 24 100.0 37 ........................ GCGAAAGCATCCGACGATGCGCTGTGCGAGCAGGTGC 1885 24 100.0 37 ........................ TACCCGTTCCGCCCCAAGTTGATTGACTGGTTAGTGC 1946 24 100.0 37 ........................ CTATCTGACACCGGAAAACTCCGTGCTAGTCCTGTGC 2007 24 100.0 38 ........................ TGTCTCACGTACGCGTTGGACAGCAATGAGGTGCGTGC 2069 24 100.0 37 ........................ TACGTGCCAGCCCCATTCGGTGTAGCGCACAGCGTGC 2130 24 100.0 37 ........................ TGCTCGACAACTCCGTATCGCCCAAGCTTGCTCGTGC 2191 24 100.0 37 ........................ GTGTGCGTTGCCCGGACAGGTACCACAGTCACTGTGC 2252 24 100.0 37 ........................ CGATGCAACCCATAATCAAAGCAAACGGCAAACGTGC 2313 24 100.0 37 ........................ TATCTGCGTGACAGTGTCCGTATTACCGCCCGTGTGC 2374 24 100.0 37 ........................ CAGGTGATTCAGATGCGGGCAATAAACGATGACGTGC 2435 24 100.0 37 ........................ GAAGGCAAAAATGACACGCAAGATACTGGAAAAGTGC 2496 24 100.0 37 ........................ CCACCACCAAACGCCTTACTGAACGACGCACCAGTGC 2557 24 100.0 37 ........................ CGACCATGACGCGGTCGCGGGCCCCATCGAGCCGTGC 2618 24 100.0 37 ........................ TATCCAGTTGGCGTTTTGGTGATGTGACCGACTGTGC 2679 24 100.0 37 ........................ GGTGTCCGTCCCATCTGCGGTGAACGTGACGGTGTGC 2740 24 100.0 37 ........................ TGGTCCTCGCTAGGCTGGATCACCCCTACAGGCGTGC 2801 24 100.0 37 ........................ GATACAGCGTAGACGAGAAAACAACACCACAAGGTGC 2862 24 100.0 37 ........................ CCAATCGTGGCACCGAAGACGTGTACCCGGTCTGTGC 2923 24 100.0 37 ........................ TCGTCGAGGCGGTCATTGTCCCCCTCTTTCGCAGTGC 2984 24 100.0 37 ........................ CGGAGCCAGCGGACCAGACAGATAGAAGATATGGTGC 3045 24 100.0 37 ........................ GCAGCTCCGGTTGTCCAAGGCGACGCAGGCGTTGTGC 3106 24 100.0 37 ........................ GCTCAACGGCTTGTTCACCAGACCGATAGTTGGGTGC 3167 24 100.0 37 ........................ CACACCGCAGGCTACCCAGTTGTCAAGCGCGCCGTGC 3228 24 100.0 37 ........................ GCGAAAACAACTGCGGCTAAAGCAGATTGGAACGTGC 3289 24 100.0 37 ........................ TCCGGGGTACCGAACATGTCAGACGGTTGACCAGTGC 3350 24 100.0 37 ........................ CAGTCGCTACAAACAGCAGGACCCATGCGGACGGTGC 3411 24 100.0 37 ........................ TTCACCCGGACCTTTCCGCTGAGCATTACGGGAGTGC 3472 24 100.0 37 ........................ GCGATCAACGCGCGAAAACGCGCCCACTACAAAGTGC 3533 24 100.0 37 ........................ GATGCGAACCAGTCCCGCACAACCTGTCGCAGCGTGC 3594 24 100.0 37 ........................ AGATTCCCGACAGCAGGTCGCTCGGTATCCCTGGTGC 3655 24 100.0 37 ........................ TCAGCTTGCTGTGTAGTCATGTCACCAGTGTGCGTGC 3716 24 100.0 37 ........................ GCAGGCTGCGACGGTGGCGCATGGTTTTGGCGAGTGC 3777 24 100.0 39 ........................ ACACATCAAGGAACTGTTGTTGCAAGCTCGTTGGCGTGC 3840 24 100.0 37 ........................ GAAAGTGTCATTGACGGCGTAGTACAAACACAGGTGC 3901 24 100.0 37 ........................ TTCTGTTGCATACCTGACACATTGCCCATCGTGGTGC 3962 24 100.0 37 ........................ TCGATGACCGGAAACTGAAACCGGGCCGACGCTGTGC 4023 24 100.0 37 ........................ TGCCACTGCCGCCGAACCCAAACGGATACGACAGTGC 4084 24 95.8 37 ..............C......... CAAGTTAACGACGCGCCGCATGTCACCGGGAATGTGC 4145 24 100.0 37 ........................ GTGCAAAAGGGCGAACTCGGATTACAGGAAGCAGTGC 4206 24 100.0 37 ........................ CTTCGTTCAGCCGTGGGTTTTGTTGAACGGAGAGTGC 4267 24 100.0 39 ........................ AACCACCACAAGCTCATCAGCAGTCAAGCCAGCACGTGC 4330 24 100.0 37 ........................ GAGACGCATGGCGACGGATTTGCGGGAGGACCTGTGC 4391 24 100.0 37 ........................ GGCGTACTGGCAGGAGGTGTCTCCGATGGAGACGTGC 4452 24 100.0 37 ........................ AATGATCAAGATCGCGCGGCTGCTCCGGCTGGCGTGC 4513 24 100.0 37 ........................ GCGCTCGGCGACGTCTCGTGTCGTGAGGAGCACGTGC 4574 24 100.0 37 ........................ GTGTTGCAAGATCGGCCGCCGCGAGTAGGGCGGGTGC 4635 24 100.0 37 ........................ GGCGTTGCGCACCGTCCGATTTGCGTTGATGTGGTGC 4696 24 100.0 37 ........................ GCTGAGCGGGCCGTCGCTGACTACCTCGCGCGAGTGC 4757 24 100.0 37 ........................ GATTCATCTGCCGATGCCGGTTGATACCAGTAAGTGC 4818 24 100.0 37 ........................ CTGTAGGTGGCACTGACATGTGAATATGCTGCGGTGC 4879 24 100.0 36 ........................ GACCAGCATGAAACACAGCATCATCGAGGTCCGTGC G [4901] 4940 24 100.0 37 ........................ TCAACTTCCACTCTTGGCCGGGCACAGGGAGCCGTGC 5001 24 100.0 37 ........................ CGCCTGTCAGCACATGTCAGTGTGTGCCCGCGAGTGC 5062 24 100.0 37 ........................ CCCGACCCGCCCGTATCCGTGAGCGATAGCCGTGTGC 5123 24 100.0 39 ........................ TCAGTGATCAAGCGTCGATTCAGACCAACACATGCGTGC 5186 24 100.0 37 ........................ TCTGCTAGACCGCGTCAAAGGTAAGCCGAAAACGTGC 5247 24 100.0 37 ........................ TCCCCAACCACGATGGCCTGCATCCATTTTCGAGTGC 5308 24 100.0 37 ........................ CAAATTGCGAGACACACGGAGTGCAGTTTGCCTGTGC 5369 24 100.0 37 ........................ GGCGAGCTCTGATGTCTGTGGGTGCGCGTTGGGGTGC 5430 24 100.0 37 ........................ CGGTATTTGCGGGTATCGGTGACTAGTACTGGCGTGC 5491 24 100.0 37 ........................ GGTGTTGTCGCAGGGCGCTTGGGTTATTGATCGGTGC 5552 24 100.0 37 ........................ CAGCAGCCGCGTGACCGCGTGGGACAACAGTCAGTGC 5613 24 100.0 37 ........................ GATCGACATCGGGCTCGCGATCGCAGTCCTCGAGTGC 5674 24 100.0 37 ........................ GTCAGGCTGCTGCGTCATGATTGCTGCGTCTCCGTGC 5735 24 100.0 39 ........................ ACACGCCAACCCCTGGGGGTTGCGGGTCGCCGGGCGTGC 5798 24 100.0 37 ........................ CCAGGCACGCCAATCCACGCTCAGATTCGCGAGGTGC 5859 24 100.0 37 ........................ GCAGGTCGGGCAGGCACAGGCACAGGCTGCTGGGTGC 5920 24 100.0 37 ........................ CCGGGTCAATCGACTACCCCCACAAAATGGCCAGTGC 5981 24 100.0 37 ........................ CTATCGATGTCTGAGAGGCTAGAGAGGAAGGGAGTGC 6042 24 100.0 38 ........................ GCGTCCTGCGTCATCAGGGGTGAACCCGCGGTTGGTGC 6104 24 100.0 38 ........................ AGTTGGCCACCAACAAGGGGCACGCTTTGACCGCGTGC 6166 24 100.0 37 ........................ ATCACCCTGCGCGCAGCAGAAGAAGACTCCGAAGTGC 6227 24 95.8 37 .....................C.. GGGTTCCGAGCGCGTTCGGAAACAGGTCAACACGTGC 6288 24 100.0 37 ........................ GCAAAATGAACTGCGTCAGCGCGTCCTGAAATTGTGC 6349 24 100.0 37 ........................ CCTGATGCGACTAAATTCATCAAAGCCGGTGTGGTGC 6410 24 100.0 37 ........................ TCCTTGACGCGCTTGATGCGGAAATGGACGAATGTGC 6471 24 100.0 37 ........................ GGCGATGGCCGAGTTCGCGCGCGGCGGGCAGGCGTGC 6532 24 100.0 37 ........................ GCCGCTTTGCGTACGGCGTCAAGGTCGGCGTCTGTGC 6593 24 100.0 37 ........................ TTATTGTGGAAATTCTCAATATTGACCCATGGCGTGC 6654 24 100.0 37 ........................ GAGGCTATTTGATGTACGTGCCCGGACAGGTACGTGC 6715 24 100.0 37 ........................ GGGTGGGTGCAGCACAGGTTACACATCTATGCGGTGC 6776 24 100.0 37 ........................ TGGCAAGCGGCCCCCGCCGGACCTGCGCACCGAGTGC 6837 24 100.0 37 ........................ GCCCGTATGCACCAGCAGTCGCAGATCATCCGCGTGC 6898 24 100.0 37 ........................ GTTCACCGACCTAATACGGCTCCGCCGCATGCTGTGC 6959 24 100.0 37 ........................ GGTATCCGCTTTGGGCACCCAATCAGCTTGCTGGTGC 7020 24 100.0 37 ........................ TGACCAGGCACGTTCAGACTCAGTCGACCAGGGGTGC 7081 24 100.0 38 ........................ GCCACAGCGGCGCCGCGCCGCGATGAACGACCCCGTGC 7143 24 100.0 37 ........................ TTACCTGTTCGCAATGCGGCAAGGCGTGTGGTCGTGC 7204 24 100.0 37 ........................ TCGACTGGCTCCCCAGACGTCCACACCGTCCGCGTGC 7265 24 100.0 37 ........................ GGTGTTGCGGCGATGATTGGGTTGCCGACGTGGGTGC 7326 24 100.0 37 ........................ CCAGCTCATCGCCGAAGTAGTGAGTGACGACGAGTGC 7387 24 100.0 37 ........................ CTCCTTGACGTCGTCGCGTTTCCCGTTCAGCAGGTGC 7448 24 100.0 37 ........................ CCAGATCAGGTCACACCGTGTGCGCGCCGCGATGTGC 7509 24 100.0 37 ........................ GCAAGATGGGCTGGCCGGCTGGCTACAGCACCGGTGC 7570 24 100.0 37 ........................ GCGATCCGCACCGCGCTGGCTGTGGCGGCCGCCGTGC 7631 24 95.8 37 .......G................ GAGCGAGGATGAGCCGCCTACATCGCTGACAAGGTGC 7692 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 126 24 99.9 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : AACGCGGGGGTGATCCTCGTCGCTCATCGACTAATCCTTCCTGTTGCGGGTGCT # Right flank : CCCCCTTAGCCCACCGCGTCGCGGACCCGAACGGCAACTTCGGCCTAGCGCGCCGTCGTCGTGCACGGGCGCCGCCAGCCTGGGCGTCACCGGAACCTGCACCCAACTGGTGCAACCGGCATACTCGGGGGTGCGGGTCAGCGCCACGGGCTCGACGAGCGGGATCGCCGAGACCACCAGCACGGCCAGCTTGTGCTTCGGCCGGAAGTCGAGCCGGTCGGCGCGCACGGACTCCGCCGTCCAGATATGCAGATCCTCGATGGCGCCAAGACCGTCGGGCCGGTTAACCGGCACCGCCGCAACAACTTTCGCCGCAGCACGCACCAGCACGGACTCGTCGGTGCTGTCGGCGGCCGCCGGGCCCAGCAGGTCGCGGTGCTCGGGTCGGACCCGCTCGGCGTGGCTATGCGCGACCGTCGGGAACAACAGGAACTCCCGGGCCGCCACCTCGAATCGCTTTTCTCCGATGCCGCCCTTGCGCAGCAGGATGGTTTGACGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 378-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQPF01000019.1 Mycobacterium lacus strain DSM 44577 contig_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 377 24 100.0 37 ........................ TCATCGGGCAGGACTACGTGTCTCGGGTATGTCGTGC 316 24 100.0 37 ........................ GGCTGCATCCTGGCGGGAGACCAATTTACGAGTGTGC 255 24 100.0 37 ........................ TCGATCACATACCGAGAAACATAGCGCTGCAACGTGC 194 24 100.0 37 ........................ GGCGCGCCCAATTGTCACACGACTGGTGATTATGTGC 133 24 100.0 37 ........................ GCGCTCTCCGGCATAGACGCCACCATCATCTCCGTGC 72 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 6 24 100.0 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : CGACTTGTGACCGTCGTCGTTCTTACCGCCGTACCACCAGGCCTACGAGGGCACTTGACCCGCTGGTTGCTTGAGATCAGCCCCGGAGTGTTCGTAGGCCACATCTCCGCGCGCGTCAGGGAGCTAATGTGGCAGCGTGTAGTCGAGTTCGTTACCGATGGCCGAGCCTTGATGGTCTTCACGGCACGAAACGAACAACGACTCGCCTTCAAGGTGCACGGTCATGATTGGGTTCCGGTTGACTACGAGGGGATTTCGCTAATGCGCCGACAGACTGTTCCCGACTATGTACCGGTCTACCGACCGGCCCATGATGCGGCCGCTCGGCCGCCGCAGCGTTCACGTCAAGCGACGGGAACAGCCTCGGACACAATCTGGAAGCGCCGCAACGCCCGAAGGAAATTCAAAGGTAAGACGTGAACATCTGCCACATCTCGTTACCGGCCAAGTGATCAAAATTTGTGGGAAAGGTTAGCGATTGCCCTAGTCAAGAAGTGTGC # Right flank : CTCGTCGCTCATCGACTAATCCTTCCTGTTGCGGGTGCTCCCCGCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //