Array 1 115739-115379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAX010000018.1 Phocaeicola dorei strain MSK.5.10 NODE_18_length_115738_cov_214.419, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 115738 33 100.0 32 ................................. TGGATGTGTAATATATATAAACTGTATGAGAA 115673 33 97.0 32 ................................T TTAAAAACAAGAGCTATGGAAAGAACAAGATT 115608 33 100.0 32 ................................. TATCAATATGGATTTTACAAAGCCCGTCCAAG 115543 33 100.0 32 ................................. TGGATGTGTAATATATATAAACTGTATGAGAA 115478 33 97.0 32 ................................T TTGATTACTTGTTTTACTTCTGCTTCCATAAA 115413 33 84.8 0 ..........G.......A.A.......G.G.. | AA [115395] ========== ====== ====== ====== ================================= ================================ ================== 6 33 96.5 32 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : | # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTCTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCATGATAAGGCCTTGTAACTGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGCCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGAAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 714-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAX010000029.1 Phocaeicola dorei strain MSK.5.10 NODE_29_length_45007_cov_218.038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 713 33 100.0 33 ................................. AGACTTCGTTAATATTAATTACATTCGTCCAAC 647 33 100.0 33 ................................. TCTTCTCAATCATATACGGAGTCATAGCGTTAA 581 33 100.0 33 ................................. GAGAAGAAATCATAATAGATTTTCTGGTAAGCC 515 33 100.0 33 ................................. AGAAAATGCATAAGAGAATAGTTCATAATCCAA 449 33 100.0 31 ................................. AAAGAATCTGGGTCATATCACACTGAATCAA 385 33 100.0 33 ................................. ATTGCTGAGGACGAACCTTCATAGACTGATAAG 319 33 100.0 31 ................................. CCCTTCTCAAAAAATCCAAGGGACGCTCTTG 255 33 97.0 34 ................................T ATATGTTGATGACGATTTCTAGGACCAAAGGAAA 188 33 97.0 34 ................................G CTTTAAGGTAGGTCGCTTCGCTCCGTATTTCGAC 121 33 100.0 33 ................................. ATGTCAATGGAAGTCTTTCCCGGCTGTACAATT 55 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 11 33 99.5 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATGGATGTGTAATATATATAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //