Array 1 1292247-1291290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061041.1 Staphylococcus warneri strain WS479 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1292246 33 100.0 33 ................................. AACAGCCTTTTTACGTCCTAACAAACCATAGGT 1292180 33 100.0 33 ................................. AACTGCAGATGCTGAAGTTATGTCTGAACATTT 1292114 33 100.0 33 ................................. AACTATGATGTCACAGTCTATGACGAAGAAACA 1292048 33 100.0 33 ................................. AACGAATCGCGACACTGTCTACATCTTTTAACC 1291982 33 100.0 33 ................................. AACAGTATATGAATAACTACCAAAACTATATTA 1291916 33 100.0 33 ................................. AACACGCAAATTAAAATATTCAACACTGCAAGC 1291850 33 100.0 33 ................................. AACAATCCATTTCACAATACTACTTAAAGAATA 1291784 33 100.0 33 ................................. AACAGACCCGTGTATGGTATCTCTATGGACGTC 1291718 33 100.0 33 ................................. AACAAACTGAGTGGCATGGACGACGAAGGTACC 1291652 33 100.0 33 ................................. AACGAATACTATCAAAACGTTCTTAGTGACTTT 1291586 33 100.0 33 ................................. AACTATAAATTATGTGATCGAATGGATAAGAGA 1291520 33 100.0 32 ................................. AACATATCAAATGCTTAACTTAGGTAAATATC 1291455 33 100.0 33 ................................. AACTCCTGCATACGAAAATACTTCAATCAGTGC 1291389 33 100.0 33 ................................. AACGCTTTTTGAAAAATACAACTGAAGCTTTTA 1291323 33 97.0 0 ................................G | A [1291292] ========== ====== ====== ====== ================================= ================================= ================== 15 33 99.8 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTAGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATTATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCAATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATTGAGAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1298285-1297986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061041.1 Staphylococcus warneri strain WS479 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1298284 36 100.0 30 .................................... GGCATGCGTATAGACCGCCACTTGATGATT 1298218 36 100.0 29 .................................... CTAAGCAAGTGTTTGTTAAAGGTTATACT 1298153 36 100.0 30 .................................... TTCTTGTTTATCCATCATTTGTTGGACGTT 1298087 36 100.0 30 .................................... TATGCCCTCATGTAATCTATGCGCCAGATT 1298021 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : AAGGGTTATATACAGACTTTGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAGGGCAAGGCTATGTACATCATGTCGCAGTCAATCTACCTACAGATACAGACTTAAATGACATTTATGAGAAAATAGCGCGACAACCCAACCCTAACTCCGGTATTATCGATCGATACTTCTTCAAATCATTATACTATCGACATAACCAAATCCTATTCGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGCTAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGACAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAGAAGACAATGTTAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAATATGTATTACTAAAATTTTTAGTAGTAAAGATTTATACGCTAGAG # Right flank : GGTGTTTTTAACAAGTCTAATCCGTATGCGTTTTAGTACTTTGTAATTTGAATATTGAAAGTATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTAAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTCGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //