Array 1 1992448-1994933 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIV01000001.1 Bergeyella zoohelcum strain NCTC12929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =================================================================================== ================== 1992448 47 100.0 30 ............................................... TAAGGGCGACCTAGACGCTAATGCCATGCA 1992525 47 100.0 30 ............................................... TCTGGCTCTTTCCATCTCTAACCTCTGCTG 1992602 47 100.0 29 ............................................... CGAGCAACGCGTGGCGGTGGCAGGTTATA 1992678 47 100.0 30 ............................................... GGGAAGTTAAAAGAAATACTACCTCAAAAA 1992755 47 100.0 30 ............................................... CCCTGTGTTATAAGGTTTAAGAACATTTAT 1992832 47 100.0 30 ............................................... GGAATTATCAACGGTTTCAATCTTTAAAGT 1992909 47 100.0 30 ............................................... GTTACAACTCTCTCTCTCTCACAAGTTGTA 1992986 47 100.0 30 ............................................... GCCCCAATGTCCCTTTCTCTCCCCGTCCTG 1993063 47 100.0 30 ............................................... CAGGGTCATGGGGTTGAGTCTTGTGTTGGG 1993140 47 100.0 30 ............................................... AAGAAAGCTAGTGTCATGGAGAACTTTAAT 1993217 47 100.0 30 ............................................... TGAATTATCTACAGTCTCAATCTTTAAAGT 1993294 47 100.0 30 ............................................... CAGCCAGGTCACGATCTCGCGGTCCGTGAG 1993371 47 100.0 30 ............................................... ACAACGCATATAGCAGAAAAAAAAGGTTAG 1993448 47 100.0 30 ............................................... ATATGAAAAAAATAGCTATTAAAACTAGAG 1993525 47 100.0 30 ............................................... CTATTTACTAAATGAATGTAATTTGAAATA 1993602 47 100.0 30 ............................................... TAAAGTTTCAGGAATGAATGACGAAGAAGA 1993679 47 100.0 30 ............................................... TGGCGACGTCCCTTGCCCGAACCCTTACCC 1993756 47 100.0 30 ............................................... TGAGATCATGACCTGAGCCAAAACCAAGAG 1993833 47 100.0 30 ............................................... TATTCTTGTGTTCTATAATTCTTCTTTCTA 1993910 47 100.0 30 ............................................... AAGCCCCATTCGGTATAGTTTCTTACCATT 1993987 47 100.0 29 ............................................... TGGCGTGTTCGTAGATAATATCAGCGTTG 1994063 47 100.0 30 ............................................... AGCGGCGGATGTCGTGCTGCGGCTCCAGCT 1994140 47 100.0 30 ............................................... GTTGGGCTGTTGGTAGTAAATTCCTCCTGC 1994217 47 100.0 30 ............................................... CTCGGGGTCATCCTCCGTAAATTCGCAGGT 1994294 47 100.0 30 ............................................... AGCGGCGGATGTCGTGCTGCGGCTCCAGCT 1994371 47 100.0 30 ............................................... GTTGGGCTGTTGGTAGTAAATTCCTCCTGC 1994448 47 100.0 30 ............................................... GTTTAATGGAAAAAAAGTGGTTTTTTAATG 1994525 47 100.0 30 ............................................... AGCCTCCCTGCCGTGTTCTTCAGCCTCGTA 1994602 47 100.0 30 ............................................... CCTTTAGAACATCTTATTCCTGGCTGGTTG 1994679 47 100.0 30 ............................................... ATATCTCCTGGATCTTTGCTTTCATGATAA 1994756 47 83.0 83 ..................................T..G..AGCACT. ACTAAATACCATTGAAGAAAATAATAAACTAATGAAGTAAAGCAATTTACAACTTTCAGATAATTTGTAATTGTATTCATATT T [1994790] 1994887 46 87.2 0 ........C....G....................T..-...A...C. | T [1994921] ========== ====== ====== ====== =============================================== =================================================================================== ================== 32 47 99.1 32 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCTCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CTTGACATACAAAAATGTAATAATTATCCATCACTCAATCAAAATTCGGTGTATATTTGCAAAGCGTATTAGAAACAATGAAACATAAACATCGTTTACTATTGTTAGGGGTATTGGTAGCTACCACAGCGGTTTGCATGAAAGCAAGAGCCCAGAAGACAGTTACTCACATCCCTGAGGTGGTGGTTCAAAAAAAGAAAAAAACCATACTCTACACTCGGCTCAATATTTTCCCAGAGGTAGAAGAAATCCGTGAGGTTACTGAAAATCATTTTTTTAATACCATCTATGAGCGAATTTCTAAATCCAATGACCTCCGCATTCTACAGACCAATGGTTATGTAAATATGGAAGAAAACCTACAAGAACAAGTAGCAGAACTTTGCCAAAATAATGATGCTGATTTCGTAGTAATTCCGTCTATTAAATTTTTCAAAGTAGGCTTCGGAAAGTATATTTTTTCTAGCCAAGTAGTAGTTACTTTAGACCTCTATAACGCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2100506-2101607 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIV01000001.1 Bergeyella zoohelcum strain NCTC12929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2100506 47 100.0 30 ............................................... AATATTATTCCACCTAATTATACTATCATC 2100583 47 100.0 30 ............................................... AATATTGTATCTTTGTCCATAGCAAAAAAT 2100660 47 100.0 30 ............................................... ACAATATGAGTTCAAATTTGTTGGATTAGA 2100737 47 100.0 30 ............................................... CACGGTGGTCACGTTGCTGCAGAAGATCTC 2100814 47 100.0 30 ............................................... GCATAAAACATATACAACTAAAATTACAAT 2100891 47 100.0 30 ............................................... CAGCACCCCATAGGGCCTTGGTGCTGGGGG 2100968 47 100.0 30 ............................................... GAAATGTAATCTGTTTTTTTGTCCCATTTA 2101045 47 100.0 30 ............................................... TCTCGTAGTCTAATTATGGCATCATTTGCA 2101122 47 83.0 10 ..................................T..G..AGCACT. ACTAAATACC T [2101156] Deletion [2101179] 2101180 43 63.8 30 A...A.GAA...A.T...C.A.T.A.GT.----.............. TATTTTGTAACTATTATTTACTTATATAAA 2101253 47 100.0 30 ............................................... GAGTCAGCCTGGAAGGGCCAGAATGTGATA 2101330 47 100.0 30 ............................................... ATTTTTATCATTTATTCGGTATTTTCATTT 2101407 47 100.0 30 ............................................... TGTAGTGAAATGGCTAATTTTTCGCGTTCT 2101484 47 100.0 30 ............................................... GAATTAAATCAGAGGTAGAAACCTTACAAC 2101561 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 96.5 29 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCTTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCTCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CAAGTAAATAAATTTTATAAATCGAGTCTATCTTGACTTTTTGAAAACAAACAAGGAATTATGATTTTTGTGGTGTGAAACATAAAAACCTAAGACCTTGTTTGTAGTACTGGACAAAGATACGATAGTAGAAGAAATTATCCCACATTTAGGTCAAACGCATGAAAAATTTTGGATAATATCTTTTAAGTAATCTGTATTGTAGGCAGCTTTGAGTCTTCGTTTCTTTAAACTTAATTTATCTTTTTGATTTTTAATTATTTGCAAGGCTAATTTCCGCAGAGCAGATAGGTTTTCAGCCGAAAATCCTGCTCTGGCTCGGCACGAATCCTCCCGAAATGTTACATCCAAATGCCAATGCAGTTTATTCTCAATTCCCCAATGCCCACGAACTAATTCATTGAAATAATCCGCCGATAAGCCATCTTCACTGCTGATATAATATCTCGTTTCTTTCAGAATATCAGCACCTAAATGCCTTTCAGACTCAATTTGAATCA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 2103712-2104143 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIV01000001.1 Bergeyella zoohelcum strain NCTC12929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2103712 47 100.0 30 ............................................... GACCGTAATCGATGGAAACCATGCAACACG 2103789 47 100.0 30 ............................................... GAGGCTAGTACCAGGGGTATATGTGGTCAA 2103866 47 100.0 30 ............................................... CTTACGGGCAATGGTTCAATGCTTAAAAAT 2103943 47 100.0 30 ............................................... TGGTTTTCTTGGGTTTGAATTTGTCTACAA 2104020 47 100.0 30 ............................................... GGGACTCGCACCCCGATGTCTGCTGGTACG 2104097 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATCAAGCTCGTAAAAAAGCAAAAACAACCAACAGTTTGTACCTGTCTGATAGGCAAGGTTTGATGTTAGCAATGTCTCAGCCTATATCTGGCGAGCATCACGACTTGTATAATATAGAGACTCATTTTCAGGAAATTACATCCGTTTTGAAAAAAGCTGAAATCTCCACAGAGGGTTTATTTGTGAATTTTGATGCAGGTTTTGACAGTGAAAATCTTCGGAAAATAACCGCTTCAGAAGGTATCATAGCCAATATTTGTGAAAACAAAAGAAACCAAAAATCACCCTCTGAAACGGAACATTATTTCGATAAAAAACTCTACAAAGAGCGTTACACCATTGAAAGAAGCAACGCTTGGATGGATAGTTTTCGCTCAATTTTAAATCGTTTTGATACTACCGTAAGTAGTTGGGTAGGTTTTAATTACCTTGCCTTTATCGTCTTAGGACTCAGAAAATTTAAACAAAAGAGAAAGTCGAGATGAGTTCATCTATTATAT # Right flank : CACTGGTTGCAATGCGGTTGATGGCTTTGAAGTTGTAACGGCTTAGAGCCGCGTATGACAACTGCATTGTAAAAGCAGAAGACGAAATCGCTAATAGGGATATGCTAAAAATTAAGGCGGTTTCTGCCTTGATGGAACGCGTACAGAAAACCAGTGCCGAAGCAAAAAACTTGTAAGCTCGCTACAAAGCGAGCAATCGGAACACGAGCGGTGGAAAGGTGATGCTTTGATAAGGGCGAATTTCGGTCTAAATCCTGAAGAACTGCAAGTAAGCCAATGGAATAAACACTATGCCCAAGCGATGTGGCTGGAAGAATGGCGACTGCAAAACCAAGCCGAATTGTTTATAAAATTGTTTGGTGGGGGTTAGTCTTTACGATAAATGGAACTGTTGTAACATTTTTTTGCAAATACAAAAATGGCATAGCCAAACCACCCCCCAAGAACAACGCCTAAAGCAATTGGGTTTATTAAAGATACAAGCAGTGTGAAAATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 4 2129403-2128355 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIV01000001.1 Bergeyella zoohelcum strain NCTC12929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2129402 47 100.0 30 ............................................... AAAAAGAGCGTTTGGAAAGAGAAGAGTTAG 2129325 47 100.0 30 ............................................... ACAAGGGTCTTTATTTTATCGCAAAGAAAT 2129248 47 100.0 30 ............................................... GGGCACATTAGTTACTTCACTTATTATTCT 2129171 47 100.0 30 ............................................... TGGACCGAACACTAACCCTAGCTAAGGCTC 2129094 47 100.0 30 ............................................... TCTCATTTAAGCGACTCAATCTGTGGTACT 2129017 47 100.0 30 ............................................... TTAGAAGGGGAAAGGCCCTGAAGACAGGAC 2128940 47 100.0 30 ............................................... CTGCCTCATTATGTCAAGCTTAGCCAAGGA 2128863 47 100.0 30 ............................................... CTCCAGCTCTTCTTTGATCTTTTGTTTTAT 2128786 47 100.0 30 ............................................... AGAGCCAGAGTACTGAATGATTTCACAAGC 2128709 47 100.0 30 ............................................... TTCTCCTCTTTCAATATTAGCAAATGAATT 2128632 47 100.0 30 ............................................... GGGCTCGGGCTTCATGAACTTTGCCCCGCG 2128555 47 100.0 30 ............................................... ATAATTACTCTGAATGTAAATGGACTAAAT 2128478 47 100.0 30 ............................................... ACAGGGAAGAAACGAACCACACCCTTGAAC 2128401 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 100.0 30 GTTGTAACCAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : TTTGTTTTTCAGCGGTTTAGGTGATTACTTCGTAGTTCTTTACAAAAATCATCTACTTTTACAAAAATATCCGTAACTTGCTCTCTCAAATTTATAGGCAATAATTCGGTTTATATATTTGATTTTCAAAACCTTAAACATACGAATTATTACCTTTTTTTGCAAATATTTTTTAATTTTTCTTATCCCGAACTCAGGTTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCTAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : TCCACAAGTGAAGTATTGAACTCATCTCGACTTTCTCTTTTGTTTAAATTTTCTGAGTCCTAAGACGATAAAAGCAAGGTAATTAAAACCTATCCAACTACTTACGGTAGTATCAAAACGATTTAAAACCGAACGAAAACTATCCATCCAAGCGTTGCTTCTTTCAATGACGTAACGCTCTTTGTAGAGTTTTTTATCGAAATAATGTTCCGTTTCAAAGGGGGATTTTTGGTTTCTTTTGTTTTCACAAATATTGGCTATGATACCTTCTGAGGCGGTTATTTTCCGAAGATTTTCACTGTCAAAACCTGCATCAAAATTCACAAATAAACCTTCTGTGGAGATTTTAGCCTTTTTCAAAACGGATGTAATTTCTTGAAAATGAGTCTTTATATTATATAAGTCGTGATGTTCTCCGGATATAGGCTGAGACATTGCTAACATCAAACCTTGCCTGTCGGACAAGAACAAACTATTCGTTGTTTTTGCTTTTTTACGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACCAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //