Array 1 4667-4893 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHCD03000018.1 Pseudoalteromonas rubra strain DSM 6842 contig018, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 4667 31 100.0 35 ............................... CTATCTTCGCATGCCCCAGTATTTTTTGTAGCACT 4733 31 100.0 34 ............................... CCAATATCAAACTTAATTTGTGCGATGGACAGGC 4798 31 100.0 34 ............................... CAGCTCCGGGCGAGTATATTGTTTCTGATGGCTT 4863 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 35 GCTGTATTCCCCGCGTGAGAGGGGATTGAGA # Left flank : CACCACAGGTTGGCTATTTAAGCCACCCAACGTGTGAACCAGAAATACCGCCGCGACCAGGGCAATGGCAGTCAGAGAAATCAATATATGCTTTAATGGATAACGCAAGGTCATGATGTTGTCCTTAATTCAGTCTTATTAGTGTTTAGGTCCTGAGAACCGATGATAAAAGGCTAAATGCTGCGTACTGATAGCGCATGACTTATCACTGATTTAAGGCTGATTTTTGGGTGTTTTGCGGGTACTATGTTGTACACTATGCTCACCAGTAACTTACTGTCATTGTGCACTTGATGCGTAATCTACCTTCAGACAACCCCGTTTGCGCTAACCTGTGGTTCTCATGAAAACCCCGGGAGGTTAGCGCTCCTGTAAGTTTATGTTTACCTTGGTATTATGTAATATGGATGCCTAGAATGCGGCTGCTTTGGGCGGTTCTGAGCGAGGTTAGCGCAAAAACCGGCTTTTGGTCTTGTACTATATAGGTTTTAGAGTAGGCT # Right flank : ATATCATTTCTGAACCACCAGTTGCATGGACATTCATGGCTGGATGCTTCCCGGTTGATGCACATCGTTGAACTATTGGATACTCCCCGTTTGATGTGGGATTAAGACTTTTTCCATGATAGTCTGAATTCAATCTGTATTCGTTTGGATGTTCCCCGTTTGATAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCTTGGATGGCCGAACTGGTTGGCGCTTCATGGACGAATCACAACAGTGCACATTTCTGACCTATTGGATACTCCCCGGTTGATAGGGGATTAAGACTCTCCACTCCTCATCTTTACTTCCATCGGATTTGGGTTTGGATACTCCCCGCTTAACTATCTATTTTTGTGAACAGTTATGACCAACCATTCATCGTCATTGTGCACTTGCTGCGAAATCTGCCTACAAGCAACTCGAAAATAACGTTGTGATTAGACTGGCAGTATCAACTGAACATCTGTTTGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATTCCCCGCGTGAGAGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 275527-276609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHCD03000044.1 Pseudoalteromonas rubra strain DSM 6842 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 275527 32 100.0 33 ................................ ATTGCTGGCGCAGCTAATCTCTGTACCAGCTTG 275592 32 100.0 34 ................................ TACTATCTGACTCAGTGGGAAGATGAGCAGTGAA 275658 32 100.0 33 ................................ TAATACCAGCTCACCGGCCCGTTGGACCGATAC 275723 32 96.9 34 .........T...................... CTGCCGTTGATGCTCAGGCGTTAACGGCCAGCTA 275789 32 100.0 35 ................................ ACCAGCTGGAAGTAGCGGTTGCTCATGGGGTGGAA 275856 32 100.0 34 ................................ CACAGCTCAGCTCATCAAAAAAGCTCTCAGGCAA 275922 32 96.9 33 ...............................T GGCGGGTTTCACCGTAAACGAGACCGCCTTCAG 275987 32 100.0 34 ................................ CATACCTTTGCTTTAACTGGAGTAATTTTTCTTT 276053 32 100.0 35 ................................ TGGCTGTTCGAATATCAAATTCGGCGGTATCAGTG 276120 32 87.5 35 ..TA..........TT................ ATGGCTCTGTCGTCTACCGGACTAAACTCCAGCGG 276187 32 90.6 34 ..T...........GT................ AGATTCTGGCGAATCAGCGCCTTCATCAATCCAG 276253 32 90.6 35 ..T...........GT................ ACGTTGATGGGCTCCGGCAGGCCCTCACCTTCACA 276320 32 93.8 32 ..T..T.......................... TGACAATCTGATGCTTATTTCCTCAAAGGTCT 276384 32 93.8 33 ..T..T.......................... ACATGACGAAAGGCTACACTTAAAAACTCTAAA 276449 32 93.8 33 ..T........T.................... AATCCAACAATCGAACTGGTCGGCAAGAGCCAG 276514 32 90.6 33 ..T.T...........A............... TCTTAAAAATGATTTATAGCCTCGCGGAATTGA 276579 31 81.2 0 ..T.A.C..T...........A.......-.. | ========== ====== ====== ====== ================================ =================================== ================== 17 32 95.0 34 GCAGCGTTCCCCGCACGAGAGGGGATTGAGAC # Left flank : AAATGATTTATAGCCTCGCGGAATTGAGCTGTGCTCTCCGCCTGAGAGAGGATTGAACGAAGTTACAATAAGTACCGAGCTGAAATACATCCGTGTAGCCGTGCCCATCGGTCATCCATGATCTCACCTCAGCAAGCTGCGACGATAATTAATCGTCGGTCTTGCTTCGCCCATCGGTCATCCATGACCTCACCTGTGCAAGCTGCGACGATAATTGATCGTCGGTCTTGCTTCGCCCCGCACGAGAGGGGATTGAGACACCGCTCAGGGCCGTTATGCAATCTGGCACTATGCTGCATTCCCCGCTGATGCTACATGCTTTTTGCGCTAACCCCTGGTGCTCATAAAAACCCGGGGAGGTTAGCGCTTCTGTAAGTTGATGTTTATTAGAATGTTGTGTAGTTTAAGCTCATAGTGTAAGTCGGCTTTGAACAAAAAAGTCAGAGGTTAGCGCAAAAGCCTGTTTTTGGCCTTGTGCTATGCTGGCTTCAGCTTAGGCT # Right flank : CGAAGTCACAATAAGTACCGAGCTGAAATACATCCGTGTAGTTGTGCCCATCGGTCATCCATGGCCTCACCTCAGCAAACTGCGACGATAATTGATCGTCGGTCTTGCTTCGCCCCGCACTTCAGACGCTGAAAGGTGATAAAAAATGATCAGTTTTATGTTGTTTTTATTTACAACTGTAAAATTAGTGTTTATATTTTTTGGTTCCCAATAAAGGAAACACAAAGGTATACACATGTTAAAGGTTAAAAAAACACTTTCAATGACAGCGTTGTCTGTCTCGCTGGGACTGGGTCTGAGTGCCGCAGCGATTGCCCAGCCGGCTAATGTCGGTGAGCACTTACTTGATAGTATAAGTACTGAATATTATGAGCCTGAAATTGTTGGTGGTAATCCAGCCAATACTGCAGACTGGCCATTCTATACACAAATTTTAAGCTCGAATGGCACCACGGCATTTTGTGGTGGTAGCTATGTCGGTGATGGTTATGTACTGACTG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGTTCCCCGCACGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 356187-356705 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHCD03000044.1 Pseudoalteromonas rubra strain DSM 6842 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 356187 29 100.0 32 ............................. AATCCAACAACCTCACTCAGCGTATAATAGAG 356248 29 100.0 33 ............................. GGGGGCACTTTGCGTTAGTGGCGGCCCACATCA 356310 29 100.0 32 ............................. CTTTTAGATAGGCAGCGAGCAGAAATTCAGGC 356371 29 100.0 32 ............................. TTCCTAAACCCCTTGCAGAACAAACGCTGGCA 356432 29 100.0 32 ............................. AAACTTAATACTAAAAACTTCTTTTACCAATC 356493 29 100.0 33 ............................. CATTTTCTGGTTGCGCCTGCGGCACTATTTGCC 356555 29 100.0 32 ............................. AGGTATGGGAGTAGCCATGGCACGCGGAGTAA 356616 29 100.0 32 ............................. GTTTCTTTTGCCATTCCCAGCGTGTGCAGGTG 356677 29 75.9 0 ..........C.GAA......T.....TT | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : TCTGGTTCGATACGCTCCAGCTGATCATACTCAATGTGCTCTTCCCAACCCTCACCGCATTACTGGGTTATGTGTTTGGCACCAGCAGGAATAATGGGGCTTAGGTAAGGTGGAAGAGTGCAGGGTTTGTATGTGGTTACAAACTGTGTACGACAAAGGCGAGTTTTGGCTTGATGGTTACTGCCTCTACCTAATGGGTTTTTTTACCACGGTGTGCTTTGCTGTTATAGAGGCCGACTGGATGCTCTTGCTTATCTCTCCATTGGTTGCATTTTTAGCTGCGATACCACTAGGCCTGATCTTATTCTTTTTATTCATGATCCTGGCAGCAGGTATTTTTTCCTGCCTGCTGTGTTGCTACATTAAACAGATGCTCTTTAACAAAGTGACTAAATAGCGAATTAATAAAAGGCAAGATCTGACCTGATCTTGTACCCAATATTTTTGGTAACTTTTGTATATCAATTTTTCTTTAATAAAAACAAGTATATAATTTTAGA # Right flank : TGGCTTGAGTAGGTTATGGGTTGTATGGCTTCGATATCACAGGGTGATTGAGTTATCTGATTGGGCCGAATCTGTACTTTTTGATGGTCTGGAAGCAGATCTGGGCTTTTCGTGTTTTTCAAAATGTTCTTTATACTCAAAGTCATGCAAGTTAGCGTGGACAACCTCTCTGACGGGGATGTTGATGAGGAATTTTTCTAAGTCTAATTCCTCTTCATCTGATTGGTTTGCTTCTGGGTTGTCCTTGTTGCTGGCTTCAATATCTGACCAGGCAGAGGCATAATTGGTGACCAATTCCAGGCGTAATTCGTCTTTACACCTGTAACCGCTCTTGAGCGGAAGTACCATAAAATCGTTCATGTGATAGCCCAGGTTAATCACATAGCCAATATAAACCTTGCGGTTTGACAGCGTAAAAGCAATGGGAAGCCCCTTGAGCATGCTGTTGTGGAGTATACCTGTAAACTCTGGCGTATCATCTGTACCAGACAAGCTAAAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 368171-369968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHCD03000044.1 Pseudoalteromonas rubra strain DSM 6842 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 368171 29 100.0 32 ............................. CGATTGGTAATGTACCTGACCTGATAGTATTG 368232 29 100.0 32 ............................. TGGATGCTCACCGGCAGCACAGAGATTGTGGA 368293 29 100.0 32 ............................. CGATATCGATAGACTGGGCCGTGACTCTGTGA 368354 29 100.0 32 ............................. TGGAGATGCTTATAATGACTATCGAACCAACA 368415 29 100.0 32 ............................. GTATTGGCCATCCCGCCCAACGCGTCGTATGC 368476 29 100.0 32 ............................. ATGTAAAAAGCTATTTTAACCTTTCTCCAGGG 368537 29 100.0 32 ............................. AAATATTCATCTCTGCTTGAATACGCAATGAT 368598 29 100.0 32 ............................. CATTAATGTAAACATCACACCTTTCACCGCTC 368659 29 100.0 32 ............................. TCGGGTGCCTGGTACCTGCGCTGTCATCGTCT 368720 29 100.0 32 ............................. TGACGAATGTTGCTGATAGAGCCAACAGTGTC 368781 29 100.0 32 ............................. GTAACTATAAGTACAAGCGAAGGGGCTATTGC 368842 29 100.0 32 ............................. CCATGGTTTATCTTCAATTTTCGCACGAAAAG 368903 29 100.0 32 ............................. GTGTCGCGCCAAATGCGGGATTTCACCATTGG 368964 29 100.0 32 ............................. TGTTATGAGCAAATCATTGAAATGCGCCGTTC 369025 29 100.0 32 ............................. TGTGGTGTATATTTGCATTTATGCAAAATTTA 369086 29 100.0 32 ............................. CAACCGTGATTAAGAAAAGGACATAAGATGAC 369147 29 100.0 32 ............................. CGCTGCTGGGGAGTGCATGGCAGCACACCATC 369208 29 100.0 32 ............................. GTCGATTGCGTTGCAGATAGTTTGTGCAACTC 369269 29 100.0 32 ............................. ATTGTCAGTGACAGCATTGAAGCCCGTCACCT 369330 29 100.0 32 ............................. CAAACATCAACCATCGGACTGGATTTAGCCAA 369391 29 100.0 32 ............................. TACACTGTCAGTCAAATAGTAGAGGTAAACCG 369452 29 100.0 32 ............................. TAGGTTAACCATTGATTTGATAATGTTGTCAC 369513 29 100.0 32 ............................. TCTTTCAGTTAAAGAAAAAACAGGTGGTTTTA 369574 29 100.0 32 ............................. GTTATATCGTTGGGGCAAACCGCAGCATCAGT 369635 29 100.0 32 ............................. ACCTGAAAATGCTGGCGCACCGTGCCAGGCTG 369696 29 100.0 32 ............................. TCTTGCCGCGCAAAGTCGGGGTGCGGGCGGGC 369757 29 96.6 32 ......................G...... AGAAGGCATTGCAGGCCAAACTGGACGCGGCC 369818 29 100.0 32 ............................. CAAAAATCTCGAAGACTTGAGAGATCTGATAA 369879 29 96.6 32 ..G.......................... ACCTTCTCAGCAGAGGCGTAAAATGTCGTTGC 369940 29 75.9 0 .............AT......T...GGGT | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.0 32 GTATTCCCCGTACGCACGGGGCTAAACCG # Left flank : TAGGTGATGAGGGTCATCGCAGCGGAGGCCCACTATGAGTATGTGCATGGTTGTGACGGAGGCAGTGCCGCCCAGGCTAAGAGGTCGCCTTGCAGTTTGGTTGCTGGAAATCCGCGCTGGTGTGTATGTTGGTGACGTGAGCAAGCGTGTTCGCGAAATGATCTGGTTTCAGGTGAGTGAATTGGCTGAAGACGGCAATGCAGTTATGGCCTGGGCAACCAACACCGAGTCGGGTTTTGATTTTATCACTTATGGTGAGAATGCCCGAATGCCGGTGGATTTTCAGGGGCTGAGACTGGTGAAGTACACCCCAAGAGCTGATGACAGTCAGGGAGGGGACTAACGAATTATTCCTGCCATTCTATCTGTGATTTATTGCTCTTTAATAACTTGGTGATTCAGATTTTTACCTCATAAAGAGAGGTACGTTTGTACCCCAAATTTTTGGTAACTTTTGGTAGGTGATTTTTCTTTATGAAAAACAAGTATATAATTTTAGA # Right flank : TTTTGCTAAGCATTTTCCCCCTGCAAGGCGCTGTTTTGCTTACTTCTAGTGTATTTTTAGGGGTTTTATTAAATAACTGGCTATTTGCCGAAAAATCAATACAATGTCGCGCTCATTTTTAGGTACATATTTAGGATTGATATGAAGCAGTTACCTTCTTTGGCCGGTTTGGCTTTGTTGTTGTGTGGTACGAGTGCCATGGCAGAGCAAGCTCAGGCGGTAAATTATGATTATGTTGAGGCGGGTTATAAACGTCACAGTGAAAGCTCGGACTTGTCCCTTGGTGGTATGCAACTCACCCTCAGTAAACGCGTCAACGAGTTTTACTTCGAACTAAATGCAGAGCAGTTTGAAAGAAGCGGTCCTGAAGTTGACCTTTTTGAAGGCTTTGGCACCATGTATTCAAATGACGAGTATGAACTGAATCAGTATCGTCTGGGTGGTGGCTTTATCTTCGACCTGGACACTGCCTCAACGATTGATGTGGGTTTGTTGCTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //