Array 1 65001-63752 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGB01000014.1 Escherichia coli strain MOD1-EC5153 MOD1-EC5153_14_length_134794_cov_39.3107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65000 29 100.0 32 ............................. CGGGGTCATAACTGGTTTTAGCCTGCACTGCA 64939 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 64878 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 64817 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 64756 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 64695 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 64634 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64573 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64512 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 64451 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64390 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64329 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64268 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64207 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64146 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64085 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64024 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63963 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 63902 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63841 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63780 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91763-90697 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGB01000014.1 Escherichia coli strain MOD1-EC5153 MOD1-EC5153_14_length_134794_cov_39.3107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91762 29 96.6 32 ............................T TCATCTTCTTCCTCCCAGCGCTGCCGCTCCGC 91701 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 91640 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 91579 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 91518 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91457 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 91396 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 91335 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 91274 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 91213 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91152 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 91091 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 91030 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 90969 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 90908 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90847 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90786 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90725 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //