Array 1 76814-76364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNH01000011.1 Cronobacter malonaticus strain cro695B2 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76813 28 100.0 32 ............................ CAATGCACGAGGACGAATACGTCTGCTACGTG 76753 28 100.0 32 ............................ GCCGAGATGGAAGCTGAAAACGATTTAGTAAC 76693 28 100.0 32 ............................ AGTAGCCGTTCAGCGATAACAGCTCACCCCGC 76633 28 100.0 33 ............................ AGTCGTCCGGCGCTTTGCCGGTGATTTTACAAG 76572 28 96.4 32 ......A..................... GTCATGTGGGAGTCATTCCAGTCGATTTACCC 76512 28 100.0 32 ............................ ACGCTGAAGGGTAGCGAACAATATATTGCAGA 76452 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 76392 27 92.9 0 ........................-..T | G,T [76369,76372] ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGCATTGCGCCTGGACGTCTAACCCCTTTTTTATGCTCCGCCTCTAAATGGTTGATTTTTAATACGCGTACTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCCGGCAAAACCGCGTTCGCCGGTAAAAATGTCACGACCTGGGGGTATAACGGTTCTCTGCTTGGCCCGGCGCTTAAGCTGCGCCAGGGCAAACCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCATGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21868-20985 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNH01000013.1 Cronobacter malonaticus strain cro695B2 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21867 29 96.6 32 ............................T CGCGTCAGCTGTGGTTATCGTCTCGTCGTAAA 21806 29 100.0 32 ............................. GCGAGGTCTGCGTGCAGCCCGTCTGGGACGCG 21745 29 100.0 32 ............................. TCGGGAAAGGGCAAGTCCGAATGCGGACTATT 21684 29 100.0 32 ............................. TGGGCCCGCGGGCCCACTTCGTAACTACTCAA 21623 29 100.0 32 ............................. CGTCGCAGGGTTTGTTAATAATGATTCCGGGC 21562 29 100.0 32 ............................. CGCCTCTATCTGTCGCAGGTTCGCGGCCAGCA 21501 29 100.0 31 ............................. TCTGCGTTTTTGCCTCATTCTTCGAAAAAAA 21441 29 100.0 32 ............................. CCAGATACCCGCGACCCAGGCGCGCTTAAAGT 21380 29 100.0 32 ............................. TCGGCAGGCTAATAGAAAAAACGTATCTGAAA 21319 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 21258 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 21197 29 100.0 32 ............................. TCCACGAAACAGCAGATCGCCGACGATATCCG 21136 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 21075 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 21014 29 93.1 0 ...........TT................ | G [20993] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAATGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGATTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //