Array 1 31255-32747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXA010000011.1 Salmonella enterica strain 91 NODE_11_length_157054_cov_201.299579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31255 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 31316 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 31377 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 31438 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 31499 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 31560 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 31621 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 31682 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 31743 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 31804 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 31865 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 31926 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 31987 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 32048 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 32109 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 32170 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 32232 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 32293 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 32354 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 32415 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 32476 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 32537 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 32598 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 32659 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 32720 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48879-50782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXA010000011.1 Salmonella enterica strain 91 NODE_11_length_157054_cov_201.299579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 48879 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 48940 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 49001 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 49062 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 49123 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 49184 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 49245 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 49307 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 49368 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 49429 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 49490 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 49551 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 49612 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 49673 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 49734 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 49795 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 49856 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 49917 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 49978 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 50039 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 50101 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 50204 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 50265 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 50326 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 50387 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 50448 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 50509 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 50570 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 50631 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 50692 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 50753 29 96.6 0 A............................ | A [50779] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //