Array 1 27396-26488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHU01000002.1 Vibrio cholerae strain N2791 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 27395 38 100.0 34 ...................................... ATTATACGCTCACGTAAAGCACTATAAACGTTGT 27323 38 100.0 36 ...................................... CTGAGGTTAACGTAACCGAAGATCATGCTATTCATG 27249 38 100.0 34 ...................................... TAACACGCATTGTCGTTTTTAGCGGTGAAATCTG 27177 38 100.0 34 ...................................... GAAAAGGTTTCTGAGTTAATGACACCTGTCTTTG 27105 38 100.0 35 ...................................... AACTGTTACAGCAACATGTCCATTTACCGGTTCAG 27032 38 100.0 35 ...................................... TCTAGCGTCTCGCGGTTATCCAATGTCACTTCCAA 26959 38 100.0 35 ...................................... GTGAACCACATATGCACGATACACGTTTTCGTTGA 26886 38 100.0 34 ...................................... GGTGAGTTGCTACCGTAGATTTCGTCGCAGAACT 26814 38 100.0 34 ...................................... CATACCTTGGCGCTCGTTTTGGTCAACGATTGGA 26742 38 100.0 34 ...................................... TCAGTGGTCAGACTGTTGCGACATTTGCGGATCG 26670 38 97.4 34 .............G........................ ACAATAGAATGCACTAATGCACTTGACATGTGAC 26598 38 100.0 35 ...................................... TTAGCCGCCGCTAATGCATCGTCTGCTTTGGTATT 26525 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 13 38 99.8 35 GTCTATCTGGACAACGCCCTGACTGAAGGGATTAAGAC # Left flank : ATCCTAGAAGGCGGCTTACGAGATTTAGGCACGAGTTTTCAGTTACTAGAAAGTGTGATTTTACCGCAAATTCAACCTGAACGCGTGGTGGTGGTGATTAACCAAGCCGATATGGTGATGAAAGGCCGTCATTGGCATCGCTCACTGGCTAGGCCTGAGCCTACCCTCGCGGCGCAATTGGCGGAAAAATCCCAATCGGTTCAGCGCCGCATTCAACAGTCAACAGGGTTGAAGATCAGCAAACCTGTTTGTTATAGCGCTGAATATGGCTATAACCTTGATCGGGTCATGAGTCATATTATTGCTCATTTGCCAACGGAAAGACGTAGTGAGCTAAAATAAAAACCGCTAAAAATAAGTGACTAATAATCAATGTATTAAAGTTGATGTGTTAAGTTTGGCTTAAAACATGCTTAAATCGGGCGATTTGCTCTGTGTTTAAAACGATTGTTTGACCCCAAACTTGCATTAATAAAAACAATCGGTTATAAACAGCTTCA # Right flank : CTTTTTGGAAGTCTTCATCGAAATCTTCTGCGTAAGCGTGTCATAAACCCGCATTCTAGGACCTCACCAATTGGCTGTACCATTTCTTGTCACCTTATTTGTTACTCTATACCTACTTAACTTAATCAAACCGTAAAGGATTAAGGTTAGTAACTTCACAGATCAACATCATATTCATCAACGCACTTAATTGATTATGCTAGGTTAACGGATTCAAGCGGGTAATTTGTAAGAGGGCAATAATGCAGACCATTCATATCAACTTAATTTCTGACCAAATCACCCCAAACCTTATTCCAAGTTTTGCCGACCCTGACTGTAGCGGGGCAATTTTGGTCTTTGGTGATAGCACCTTAGACACCAAAGGTGACCGCTTAGAAGAGATCTATCAGCAGCGCGGCATACCCGTAGTATGGCGTAGCCATGGTAAAAGTAGCCACCACTTACCGACGTTAAAACAACAAGCACAAGACCTACTTAACTATCTCACTGAGCATCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATCTGGACAACGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 4073-4700 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHU01000037.1 Vibrio cholerae strain N2791 NODE_133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4073 28 100.0 32 ............................ AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG 4133 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCTTTATTAG 4193 28 100.0 32 ............................ TGCACGATACTATCACCAACGCCGATGATTGT 4253 28 100.0 32 ............................ TTTTAGGGCGATAGGGATAAAATTCTCGTATT 4313 28 100.0 32 ............................ TTTCAGGCCGATAGTGAAGTCGTACTCACCCT 4373 28 100.0 32 ............................ TAGCACGCTAGATGATGAGTTGTAATAGCTAA 4433 28 100.0 32 ............................ CGTAGATTTATTAAAAATGGTGATCTTGCTGG 4493 28 100.0 32 ............................ GTTAACTAAATACATAGAAGAGTGAGGGGGGA 4553 28 100.0 32 ............................ AATCCTCAGTGCGTAAAATTTCATCAATCTGC 4613 28 100.0 32 ............................ GTCAGAGTTTCGACATCACGATTGAGTATTTC 4673 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAACTAGAGTCTTATATACTCAAGCCCATGTCGGAACGGACTATTTAGTAAGGTTTTTGACCTTTGATATTGCCTTACATGAATTTTTTAAGTCTATCAAAATCAATAGGTTCTCTCCAATTTTCAATGGATATGAAAGCGGAGTGTTCACGGATCTCGGTTTTAGTAAAAAAATATTCTCTGAAATTGATGATCAGGAATTTGAAGAGCTATCACGTATTATTTTAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTGTTACTATGCGTTGGTTTTTGTTGTTACGGTGTTATGCGGTAATTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATATTTCTTTTCAGTTCAACCATCAAAAGGATTCATCATGAACGTGGATAAGGCGAAAAAACGCATATTGAAACGAGTACAAAGAGGTTTCAGAGGTTATCCGCAAATATCATTAGAGTATTTCGGTGAAACGACCGATTTGGCGACCGAAGTAGTCATCACTTTTGTTCCTGAAGAAAATGCCGAACCACAAATTCAGAGATTTACGAGTGACAAAGATGTCCGTGAAGATGAAGCGATTCAATCGGTATTGCTAAAAATCATTGAACGAGCAGAAGCTGCGACTGTTTTAGAGAGCCGAGAAATATCGGTTATTTAATGATTTTTGGCAATGCTCAACGTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //