Array 1 98-3157 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQI01000009.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1559c x_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 98 30 100.0 35 .............................. GTTTTGTAAAATTGATAAACCTTACCATTAAGCCA 163 30 100.0 36 .............................. TATTGCTTCTTTTTTGTTTTAGAGTTTTTCGATGAA 229 30 100.0 36 .............................. TAGATATCGCCTATTACTTCAAGTTCGCTAAGTGCA 295 30 100.0 36 .............................. TGAATTCACAGACCTTGATAGCGTGAATTCATTTTT 361 30 100.0 37 .............................. AATGCAAAATATAAGCTAAATCTGAAGCCCGTTGTTA 428 30 100.0 38 .............................. CAATCGCCCCTATTTGATAGCCAAAAGGCGTTCCGTTT 496 30 100.0 38 .............................. GAGGGTGGAAATAGTGCGTTTGGCGAATTTCTAAAATG 564 30 100.0 37 .............................. TTGACTATGGCGGAACAGGTTTAACTATTGTCAATGA 631 30 100.0 34 .............................. GATACTATAAACACACATAAAAAGGCTGAATTAA 695 30 100.0 37 .............................. ACTTTCACTGGCAACCAGACGGCGATCGCCCAGCTGG 762 30 100.0 37 .............................. AAGGATTTTTAATGCCAACCTATAAAATAACTCAAAA 829 30 100.0 39 .............................. GAGCTGATTAACGAACACTTTAAGAAAAGTTTTATTAAA 898 30 100.0 38 .............................. ATAGGATTTCTTGCAATGTACTTTATGTCATTTGTATT 966 30 100.0 36 .............................. ATAATACAATTAATAATCTTGAAAAAGATAATGAGA 1032 30 100.0 35 .............................. GCAAATGAGAAAGGCATAGGTAAAAATCTTGCAAT 1097 30 100.0 35 .............................. TGATGATAATAAAGCAAAAGGGCTAAAAATAATAG 1162 30 100.0 37 .............................. AGCGATAAGGGCTTAGCTTGTGTTAATTTAAGCGTGG 1229 30 100.0 36 .............................. TTTTAAGCCTTTTCATCGACAAAGCAGACTACTACG 1295 30 100.0 35 .............................. TATATTACCTTTGCAAATTCATTCTCTCCGATAAC 1360 30 100.0 34 .............................. TAGCTATAATTGCTTTGTTGCTGAGTTTGAGCAT 1424 30 100.0 36 .............................. TTATAGATACTCTCCTCTGTTTGAGGGGTGCCTAGG 1490 30 100.0 38 .............................. TTTCATCGCCAAATTCTCTACGAATTTTTGTGATTATG 1558 30 100.0 35 .............................. GATAATCAAAAAACCATTTTACCTTCCCCTTTGAA 1623 30 100.0 34 .............................. TGTTTAAATAGCCTTAAAAACGTGGTTTGGTTTT 1687 30 100.0 36 .............................. GAATAAATAATAATCTAGTCGAACTTAGCTATTTCA 1753 30 100.0 37 .............................. TACCTGAATTTAGCGCAGATATCGCAAACAGAAAGGG 1820 30 100.0 35 .............................. TTTTATCTATCAGCATCAGACGATAAATAAACAGA 1885 30 100.0 34 .............................. GTCTTGCTGCTCTATTGTTCATTTGATGCCTTGA 1949 30 100.0 39 .............................. AAAAATCACGTCGAGCCTGTAGTGTTTTCCAAGGCTTTT 2018 30 100.0 35 .............................. GTATAGGTGTATTTGAAATGGTCACTGGGTTTGGG 2083 30 100.0 35 .............................. TGCAGAGGTTCGCCCTTGATATACTTTGGCTTGAA 2148 30 100.0 33 .............................. AATTTCACTATGGTATTAATCTGAAAAGTTGCT 2211 30 100.0 35 .............................. TTTTTTGCTTTTTGCTCTTGAGCGTCAAGCCAAGC 2276 30 100.0 36 .............................. GATGAGGACTATCCGCGAAAAAAAGACGGTAAGCCG 2342 30 100.0 36 .............................. GTCCATCTAACAGAACTCCTAAGCCTAATCCTTCAG 2408 30 100.0 35 .............................. GACATCCAGTTTGTTTCTTGGTTTAATTGATTTTT 2473 30 100.0 36 .............................. ATAAATTAAGCAGAGCTATACAAAATGCCGGAGAAA 2539 30 100.0 36 .............................. GAAGCACTAAGTAAAACAAAGAAAGGAGAACAGTAG 2605 30 100.0 37 .............................. TGTTGCAAAGCGTTACGGCACTACTACAATCAATATT 2672 30 100.0 34 .............................. ACTTATGACCCTGAATCTATTAGACTTGGTTATT 2736 30 100.0 35 .............................. TATGATAACCTTAATCAAAACAATGACAAGTTTGA 2801 30 100.0 33 .............................. AATTTCACTATGGTATTAATCTGAAAAGTTGCT 2864 30 100.0 35 .............................. TTTTTTGCTTTTTGCTCTTGAGCGTCAAGCCAAGC 2929 30 100.0 35 .............................. TCCGTGATGAGAACGATACGATAGAGATCATAAAC 2994 30 100.0 38 .............................. AGATTTGATCTTGCAACTGATGTCGCTGGTGTAATGTT 3062 30 100.0 36 .............................. TTTGCTGAAGTATCCTTTTGTGTATCTGCCCCATCT 3128 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ======================================= ================== 47 30 99.9 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGCTG # Right flank : CTTTTTGTGATTTGCATTTTTTATCGCAGTTGTAGCTGTTTTGATATTTTTGTCTAAGGCATCACTTAGAGTAGTGGCTGTTTTGTTGATTTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAGAAAAAGGCTTGTAGATGTTTAGTTTTATTCTTTTTATTTTGGTTATTATTTTAATGAGACTTAACTGCCATTTTGATTTTAGCTGCTCAAAGCCTTACACTGGCAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAAATCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATGGTATAAAATTCACCTTTTTAGGATTTGGAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 255-3891 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQI01000013.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1559c x_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 255 30 100.0 34 .............................. GTTTATGAAAATAAAATGTAAAGAAGTGTAAAGT 319 30 100.0 37 .............................. CTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAA 386 30 100.0 37 .............................. TACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGC 453 30 100.0 36 .............................. CATATACAAATTTACCAAACAATGAAAAACATAAAA 519 30 100.0 36 .............................. TGGAAACGCAATAGCAAGTAATTCACTAGCAATCAC 585 30 100.0 34 .............................. AAAATGATAGAGATAATAGATGAATATAACCTAT 649 30 100.0 37 .............................. TTAAATTTAATGATAAAGGAAATACCGATGAAAAAGA 716 30 100.0 36 .............................. CGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAG 782 30 100.0 37 .............................. TTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTC 849 30 100.0 38 .............................. CCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAAC 917 30 100.0 35 .............................. CATATTACCACTATTATCTACTATGTACCACATAT 982 30 100.0 33 .............................. AAACACTTTCAAAATTTATAAAAAAGGTTATCT 1045 30 100.0 38 .............................. CCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAA 1113 30 100.0 34 .............................. ATACTAGTCATGATAAGAACTCCGAAGAAGAGTT 1177 30 100.0 35 .............................. TTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTG 1242 30 100.0 36 .............................. TTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAA 1308 30 100.0 34 .............................. AAATTTCAATGCTCATTTTTCCGTCCTTTTTTGA 1372 30 100.0 35 .............................. GACAACTTGGAGCTTAGAAAACTTCATAAAAACCA 1437 30 100.0 37 .............................. ATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTA 1504 30 100.0 36 .............................. AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA 1570 30 100.0 36 .............................. ATATATAGTTTGGGATAAAAAAGAAGATGGCAAACC 1636 30 100.0 38 .............................. TCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCG 1704 30 100.0 34 .............................. TCAATATCTTTTATCTTGATTTCAAGTGGTTTTA 1768 30 100.0 35 .............................. CATTACAAAACTTACTCTAAAAGCAAAATATATGC 1833 30 100.0 34 .............................. AAAACCAAACCACGTTTTTAAGGCTATTTAAACA 1897 30 100.0 37 .............................. TGGTCAGATATCGACTTTGCAAGGAACTTGATAAATA 1964 30 100.0 36 .............................. CCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA 2030 30 100.0 36 .............................. CCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCA 2096 30 100.0 36 .............................. CGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGA 2162 30 100.0 34 .............................. CTTTAAAGCCTTCATTTTCTTTTATGCTATCTAT 2226 30 100.0 37 .............................. GCTTTTTTAAAAAAGGAGAAAAATGAAAAATGAATCA 2293 30 100.0 35 .............................. CTACTCATCTCAAATGCAGTAGCACCAGTAGCAAG 2358 30 100.0 34 .............................. TTAAAAAACAAGCTCCACAGCACTACAAAGAGAG 2422 30 100.0 37 .............................. AAGGAGATGGAAAATGAACACGCAAACTATGCAAAGT 2489 30 100.0 35 .............................. GGGGAAACGGATATTAACGAATTACAAATAAACAC 2554 30 100.0 37 .............................. TGACCGAGATGGAAAAAATAGAGGCTAAAGCCCATCA 2621 30 100.0 35 .............................. GTATTTAAGATAGGTGGTGTGCCTATAACTTATCA 2686 30 100.0 35 .............................. TCCGACCAACAAGGCGAAACAAAGACAATAGTAGA 2751 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAAAA 2817 30 100.0 37 .............................. CCACGCTTAAATTAACACAAGCTAAGCCCTTATCGCT 2884 30 100.0 34 .............................. TAGACAATACTGCAGATATGTTAGATATAGGATA 2948 30 100.0 37 .............................. AGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGA 3015 30 100.0 36 .............................. TTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCT 3081 30 100.0 33 .............................. CAAATTTGACATGGTTTTGAATAGCTTGTACAT 3144 30 100.0 34 .............................. TTTTTATAGGTATTTGGTGGAGTTTTTGGGCTAG 3208 30 100.0 37 .............................. TGTGACCCAAGAGACGAACAAAGAACAAATGAACTCA 3275 30 100.0 34 .............................. ATCTGGATTCTTTTATCGAAGTATTTAATGAAAC 3339 30 100.0 37 .............................. GTTAAAAATTGAGTTGAAAAGCTAGGCTTATCTCGTA 3406 30 100.0 35 .............................. CTCACGCCCTAGCATAGCATTCAACCGCGATATTA 3471 30 100.0 33 .............................. GCGTAAAGATGCTATATATCACAGACCACGAAC 3534 30 100.0 35 .............................. CCATACATAACACTGCTACAATGGAAAAAAACGGA 3599 30 100.0 34 .............................. TCAAGCAAAAATAACAAACGCTTTTTTTAAAAAG 3663 30 100.0 36 .............................. CTTTTGTGTAAGTGCTACTCAACTTGGTGGTGCTGC 3729 30 100.0 34 .............................. TGGAATATTATGACAAGCTAATAGCTAAAAATCC 3793 30 100.0 39 .............................. TGATGAAACGCTAGTCGTGAAAGACAGCGATAAACCACT 3862 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 56 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCACATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATGAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTAG # Right flank : AGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //