Array 1 95078-96081 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXOG01000007.1 Salmonella enterica strain BCW_1553 NODE_7_length_205530_cov_0.341536, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     95078	    29	 100.0	    32	.............................	AAAACAGACTTTGACCGAGTCTGATATTGCGC	
     95139	    29	 100.0	    32	.............................	ACCCGGATCGTTGCTGTACATCGCAGTAGCGG	
     95200	    29	 100.0	    32	.............................	TCGATCGGCTTCGTCTGCCCGGCAGCCAGCGA	
     95261	    29	 100.0	    32	.............................	CTAACGAGGATACCTCGTTCAATGGGGGCGGC	
     95322	    29	 100.0	    32	.............................	CCGTCGAGGCAACAAACAGCCAGATGATGGGC	
     95383	    29	 100.0	    32	.............................	ACTTCCTGAGTACCGTAGATCATAAGACCCCC	
     95444	    29	 100.0	    32	.............................	ATTACCCAGCCCGGTGCCGTCCAGGTATTCTT	
     95505	    29	 100.0	    32	.............................	ACTCGTACGGAGAAATCGCCATCCTGTAAAAA	
     95566	    29	 100.0	    32	.............................	TCTGGATACCGGGGGTACGAGCGGTTACACGC	
     95627	    29	 100.0	    32	.............................	CCCGCGCCGGGGTGAGTTTTATACACGCAGTA	
     95688	    29	 100.0	    32	.............................	GTTGCCCGATGCGCAGCCGGTAACTCATGGCC	
     95749	    29	 100.0	    32	.............................	CATTATCAACATATATCTGGCAGTAACTCGGT	
     95810	    29	 100.0	    32	.............................	TTTATGCCTCCACTCCAGATGAGGCGAGGGAG	
     95871	    29	 100.0	    32	.............................	ACGCCATGATCAAGAGCTTCAAACATAAGGGC	
     95932	    29	 100.0	    32	.............................	TATTCAGATATAACCAGCACAAGAAGTTTTAA	
     95993	    29	 100.0	    32	.............................	ATCACGCGCCCGAAACCTACACCGGCTTATTC	
     96054	    28	  96.6	     0	.......................-.....	|                               	
==========	======	======	======	=============================	================================	==================
        17	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAATTTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT
# Right flank :  GTTGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAGACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATGACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCAATTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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