Array 1 1281589-1284002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020422.2 Neisseria meningitidis strain FDAARGOS_211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1281589 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 1281655 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 1281721 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 1281787 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 1281853 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 1281919 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 1281985 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 1282051 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 1282117 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 1282183 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 1282249 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 1282315 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 1282381 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 1282447 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 1282513 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 1282579 36 100.0 30 .................................... AAATTGTATTAGCTTTTGCACAAATTTATC 1282645 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 1282711 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 1282777 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 1282843 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 1282909 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 1282975 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 1283041 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 1283107 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 1283173 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 1283239 36 100.0 30 .................................... GCGGGTTTCCTGTGTGGCGCGTGAATTTAA 1283305 36 100.0 30 .................................... AGATTGCGACATTGAAGAATGTAGCGACTT 1283371 36 100.0 30 .................................... CCAAAAAATCTACACAAGCATGGAAATCAC 1283437 36 100.0 30 .................................... ATACGCGCCTCGCACTTGTCCACTCGAGCA 1283503 36 100.0 30 .................................... ACCTGTTCCGTCCTTTGCTGTTCGTCCTTA 1283569 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 1283635 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 1283701 36 100.0 30 .................................... CCCTTCGCTGTATCAAAGTCAGAGAAAGCA 1283767 36 100.0 30 .................................... CCGGGATAACCGGTTGCCTTTATGTATTTG 1283833 36 100.0 32 .................................... TACATCGACGAAATCGCGCGCGCGCGCACTTT 1283901 36 100.0 30 .................................... TCCGTATAGATATGGTTGACATCTACCGCG 1283967 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 37 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //