Array 1 27075-28366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLX010000016.1 Clostridium perfringens strain CP-42 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 27075 30 93.3 35 AA............................ GAAATTAGAGATGCTGGTGAGCATATCTTAGTTCA 27140 30 100.0 36 .............................. CTATGAATTAGCAGAACCAGTTGAAACACCTTTAGA 27206 30 100.0 36 .............................. TACAGGCGATAGATTAAATATGAAAACTGTTTTTAT 27272 30 100.0 35 .............................. GGACAAGAAGTTGAAGGTGCCAGCTTAAAAGAAAA 27337 30 100.0 36 .............................. ATTATCTTATCTTATTCTTAAGAATATGGGATTATC 27403 30 100.0 34 .............................. TAATTGCATATCTTTAGGATTATAACTTATGTCT 27467 30 100.0 34 .............................. ATAAAGGTTATGCTAAATTTGCTAATTTAATATG 27531 30 100.0 35 .............................. ATGAAACTCTAAAGATTAAATAAGGAGGGAAAGTG 27596 30 100.0 223 .............................. CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATGAAAACCTAGTTATTTCAATAAGTATATCATAATTTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTC 27849 30 73.3 60 C.A.T....G....T..T.....A....C. CAAAGTATCTCACTATAAGTTACAACTTAAATATTTTTAAAATAATGTTCAACAGCTTCT C [27860] 27941 30 70.0 37 A.GA.G..TT...TT.A............. TACCATATAAACAAGATAAAAAAGATATTTTAATCAA A [27952] 28009 30 90.0 35 ............TAT............... ATTTCAAAACCAAATGGCTCAGGCTCAACTAATGT 28074 30 90.0 36 ............TAT............... TGGAATAATTCTTGTTACAATTTTTCTTTTGTCTTT 28140 30 90.0 35 ............TAT............... GGTGAAAGCTTTATCAACCCTACTTATGTTGTCAA 28205 30 90.0 36 ............TAT............... TGTTAAAAGCTTATTTGAAAATTCTTATTTTAACCT 28271 30 90.0 36 ............TAT............... TGGATTAGAAGATATAAAAAAGAATGAAATAGGATT 28337 30 90.0 0 ............TAT............... | ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 17 30 92.7 49 GTTTAAATACATACCATGTTAATGTTCAAC # Left flank : ATTAAAAGCTCTAAGCCTGGATAGTCCTTTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTTAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATTCTTAGATATATGATCTATTAATCTTCAAAAATAAAAA # Right flank : CACTTGTAAAATAGCCATTTTAATTTATTAGATTCTTATGAAAACCTGTCTATTTCAAGAGGTACATTATAATTTTACCAGTGTTTCACACTTTTTTAAAGTACTTAAACAAAACTTGTCTTAATCTCTCTTATTTCAATACTTAGATAATATTCTCAACATCTTTTTTACTGGTAAAATAGTTAACTCTAAATTACTTAAAATTTCATAATAATATTTAAGTTCTTATTGATAAACTACTCTTTTATATTCAATCCCAAGCATCACATTACAAGTTATAGCTTAAACAGTTTAAATACATATTATGTTAATGTTAAACCACTGTAAAATAGCCATTTTAATTTTACCAATATTTATCTTTTTTAAATTTTTTAGTTAATTTTATTAATTAAGTTATAAAAAATAGATAGACCTTAAAATGTGATCTACCTATTTTTCTTTTATTTTTAAATTTATAATGTACTAAAACTATGAAGATAAATTTTGGCAACTTTTTAATA # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-1.24, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : GTTTAAATACATTATATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //