Array 1 30912-31550 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNS01000003.1 Bombella apis strain SME1 scf7180000000148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30912 29 100.0 32 ............................. GCTCGCTTTCCTGGGCGAAGATGCGCTGCTGT 30973 29 100.0 32 ............................. ACGCCGCCCCGCCTCTTGCCGTCCGTCTCGCC 31034 29 100.0 32 ............................. AAACTGGCGGCCTCTCTCGGGTGCGGTGTCTA 31095 29 100.0 32 ............................. TCCCTCTGAAGGTGGTGAAGCACGGGGTTGAG 31156 29 100.0 32 ............................. TCCGGCATTGTCCGGCGGTTCTGGATGAGGCC 31217 29 100.0 32 ............................. CGGGTCAACCCAGCCCGTCATGCTGTTCCCGG 31278 29 100.0 32 ............................. ATCCGATCAGGAAACCGCCTTGCATTGGGGAT 31339 29 100.0 32 ............................. ACACGCCGCCGCAGTCTGGGATCCCCATCCGC 31400 29 100.0 32 ............................. CTTCCCCGTGTTGGTGTTGCCCAGCTTGCCAA 31461 29 100.0 32 ............................. ACGAGCGCAGGCAGGCCGCAGAACGGGAGGCG 31522 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGTCTGCCTCGCCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGTGCCACCCCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTTTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGATCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACAGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAGGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : GTCTTCATGAAAGACTCCCTGGGAACAGCTGGGGACCAGGGGAAAGTCCTTAAAAAACTTGAGGAACAGCGCAGAGAGGCCAACAGCCTCATATTGAGGATGCCGGGTTATAAATCCAGTGCAGTCACCCTATCCGGCTACGAATTCGACCGCACATCTCAATCAGGGTGCGATCTTCTGGTCGTCCGAATGACTTTGCAGGAAGTGCGTTTCGGGGCGAAAAAATGGGTGGTAATGAAGAATGGGACACCTGTTGAAGCTGACAATATGGGTAAGAAAATCCCCAAGAAAGTAAGTGGGTAATTATTGATAATTGAACCTGAACCCAATCCCCGCAGTGCCAATGCCAGAGTTATCAAGCTTTATATCAAAGTCATTCTGACCCCAGCATTTTGCTGCCATAAAACTATTTGCCGATTGGATAAAATCCTTCCCGGTTCCTTTTGGTGCCGAGAAGTGACATGAATCTGCCCGCCAATAATTGTCTTCTCCTTTCTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78009-75905 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNS01000005.1 Bombella apis strain SME1 scf7180000000150, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78008 29 100.0 32 ............................. GTACGTGTACCGTTAGCTCATAGCTAACTCTC 77947 29 100.0 32 ............................. CCCTGGCCCGCTTCCATCAGATCAATAACAAT 77886 29 100.0 32 ............................. TAATCTGGCCCAGTGCTTTCTTTAGGCTCTTT 77825 29 100.0 32 ............................. AACTCCCGTGGGCAGCTGGACGATCCAGATGA 77764 29 100.0 32 ............................. CTTCTCAGAGGCTCTAAAGGGTAATTTCATTG 77703 29 100.0 32 ............................. GTGGGCGGGAGCGCGCCAACGCTGCCCACCCT 77642 29 96.6 32 ............................C GGGTCGGCAGGAACTACGAAACGGGGAACGTC 77581 29 100.0 32 ............................. GCCCTCAAACAGGTCGTGTCTGACAGGAAAAA 77520 29 100.0 32 ............................. AAGAACCGCTTGGCCTGCTGCCTCAACTTGGT 77459 29 100.0 32 ............................. TGGCATTCCAGTCCAATTTCACACCGCCTGCA 77398 29 100.0 32 ............................. CTGGAAAGGGTCATTCGTCTTGCCATTCAGAA 77337 29 100.0 32 ............................. GACTGCCGGGTTTTTGTCGGTTTCTCCGGCTC 77276 29 100.0 32 ............................. TCAGGCCCCCTGCGTGAGGTTCTGGCCCGGGT 77215 29 100.0 32 ............................. AGGTTTTTTTGTTTTCACAGAAAAAAATCAAC 77154 29 96.6 32 ............................C TCCGGCGGGGAGAGCCAGCGCATCCGGCTGGC 77093 29 100.0 32 ............................. GCGGCCAAGGCTGCCGGATTATCTCGGCAGGG 77032 29 100.0 32 ............................. GCCCGTCTGCGTGGTGGAGACCGAAACAGCCT 76971 29 100.0 32 ............................. GACATCCGCCATTCTGTCTTCACCCGTACGCA 76910 29 100.0 32 ............................. GTCATAGTTTCCACCGCATGGTGGGCGGGAGC 76849 29 100.0 32 ............................. CAGGCGCAAAAAACCAACGTGAAGAGGGACAC 76788 29 100.0 32 ............................. GTCATATCAAACGACCACAACGTGCCGTGGTG 76727 29 100.0 32 ............................. CCGCCTTCTGCATGGTCGATGTGCAGCACGTC 76666 29 100.0 32 ............................. GAAAGACCAGATCGGCGCCCTTTCGGCCCGTG 76605 29 100.0 32 ............................. AGGGGCATGGTTTTTTCTGTTTTGTTCTTTAC 76544 29 100.0 32 ............................. GGTAAGAAGCCGGTTGTCGGACGGTTCAGCGT 76483 29 100.0 32 ............................. AAACAGCCTGCACACGGATTAACGCAGCTAAA 76422 29 100.0 32 ............................. GCCTCCAGTTCGGTGATCGTGACCACCGTTTT 76361 29 100.0 32 ............................. GGTCCGGGGAATACCTCGGACCCTTTTTGTAT 76300 29 100.0 32 ............................. GGCTTGCGAGGATAGGCCTCGATCAGCAGGGC 76239 29 100.0 32 ............................. AGGCTTTGAGTGGCGGCATGTTTTCCCGGTAC 76178 29 100.0 32 ............................. TTCAGATGGCAGGAATGACCGACGCCCAGTGG 76117 29 100.0 32 ............................. ACGAATGACCCTTTCCAGCTTTTGAAAGAGCA 76056 29 100.0 32 ............................. TCATAACAGAGCAAACAGCGGCCCGCTTCACT 75995 29 100.0 32 ............................. AGACTTATTGGTCCCAGTCAGCCCATCTACCC 75934 29 89.7 0 ............C.........CA..... | T [75907] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.5 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TCGTGTACTGCATGGCCCTCCTGCTGGAGCTGCTGCGGGGCAGGAATGAAAAAGGCGAGAAAATTGCGCTTCAGGAGCCGTTCCTGACGGCAGAACAGTTGAACATTGCTGCCTCTGACGATTTTGAGGCTTCCATCGGTCTGCCTGCTTTCGACAGTTGGCGTGATCTTCTGACCCCAGAGATTAAGCAGGAGATTGTGCGTGATCGGGAGCTGATCCGTCAGAAGGGTGTTCTGGCCAGCCTGCCCGTGTGATGAGGCGATGATCCGTTGAAAATTGATTGTGTGTAGAGAAAGGGAGGCTCCGGCCTCCCTTTTTCATCTTTGCTGTCAATCTTGTGGATAAAATTTTCTGGAGTGGTTTTTGGCTGTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAGT # Right flank : GTGCCAGACCGCCATCACTGGCCTGTACCGAACTGTTCGCCAGTGGGTCATGGGGTGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGGGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGGGCGGGGTCGTGCGGCCATTGCTGGTTGACCAGCGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1402-1703 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNS01000006.1 Bombella apis strain SME1 scf7180000000151, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1402 36 100.0 30 .................................... AGGCGAGTTCCAATTCATAGGGTATCAAAT 1468 36 100.0 30 .................................... AACCTTGCCGACAGGCCCATAGCTCATTCC 1534 36 100.0 31 .................................... TGCATTGACTTCCATATCCATTCCCCGCTCA 1601 36 100.0 31 .................................... TGAAGAGCCTTTGCCATGCCGTGGGGCCATC 1668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 31 GCCGTGGTTTCCCTACCGATTTGTCTATGGTAGCCT # Left flank : ACTGCTCCTTAAGGAGCGGAAAAGTCGGTCGCCGCCAGGTCCCCTCGCTCACCCACCCCCATAAAAACCACCCACTAACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAATCCTACCCCCGCATCCATACCCACGAATACTCCCAAACAAGTTGATACGGAACCATCGGCATATTGCTTGTTAACAGTAGAGCTATGTTGTGGGGAAGCGTGCCTGCAGAGCTCTACAAATAGGCTCATGAATGGTTTGGGTGGATTGTTCGGGCAATTTTCTGCCCAGCAAGCGCTCTCAATGCCTGACCCGGGAGTGTTGGCCAGGAAGGTGATATCCCAGATTACGTTTGGATTTGGGTTCCAGGTTACCCTATTGGCAGCAGTGGCGCTTGCTATCATGCGCATATAAGGGCCATTCAACGCCATTTGAGAGAAGTGTAAGCTTTTCTGAGGGAGGCTGTCGGATAAGACTATCGCAA # Right flank : TTAGCTTGAGCGTAACGGACTGATACTGCATGATTTTTCGCTGTTTTGCGGCCGAAAATCATAGCAGTATCATCTGTTTTGCGCCTGCTTGTTCGGCTTTTTTTGCAAGACCAAGCATTATTTCCATCCGTCCGTATTGTTTGTCCGTGACCTGAAGTGCCCGGACACTGCCTTCTCTGGGTAGGACTGAGCGTACACGACGCATATGTTTGTCCAGACTGTCCTGACCACGTCCGACACGGACATAGACAGAATATTGTAGCATGATGAAACCATCATCCCGCAAAAAATTGCGGAAACGGGTGGCCTGTCGACGTTGGCTTTTTGTCCGGACAGGGAGATCGAAAAAAATCATCAGCCACAAGAATCGGGCCTCCTCCGCTTTCATGGGGTTGTTCCTCCTGTCGGGAGGACGGGCAACTGGAGCAGGGCCGCACTGCTATGCTCAAGAGCCTGTACCAGACTGGTGGCAATCTTTTCTGTGGCTGTCAGAATGCTCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGTCTATGGTAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //