Array 1 16754-17098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBA010000020.1 Bifidobacterium longum strain D33t1_170424_E8 NODE_20_length_29431_cov_70.0885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 16754 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCGCGGCGGTCATCACGATCGCCACGGTCATCGCG 16820 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [16826] 16904 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 16964 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [17012] 17012 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 17069 27 81.5 0 C.............C.....C....CG | GC,C [17086,17090] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 818-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBA010000004.1 Bifidobacterium longum strain D33t1_170424_E8 NODE_4_length_185122_cov_73.1931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 817 36 100.0 28 .................................... CGTTGAGATCACGGTCCATGACCATGCC 753 36 100.0 28 .................................... GTGTCCATGGAGATGTCCATCGAGATAT 689 36 100.0 28 .................................... GTACTGAACGCCCTGCGTCTGTGCAAGG 625 36 100.0 28 .................................... TCCATGAAATTACCATTGGTGACTGTCT 561 36 100.0 28 .................................... ACATTGATAATCGCCTGTCGGTACTCCT 497 36 100.0 28 .................................... TTGAATTTGTGGAAGGATGCGGGTGTGT 433 36 100.0 29 .................................... ATTACAAACTCTCCCCCGAAACGGTAGAA 368 36 100.0 28 .................................... TTGAGGAAGAACCTGACCAACAAGCAGC 304 36 100.0 28 .................................... AACCTGTTGGCCTGGTCCCAGTCGCTCG 240 36 100.0 28 .................................... GCCCGAAAACTCATTATAGGATGCAACC 176 36 100.0 28 .................................... TTTTGCTTGCGCATGTTTCACCTCCATA 112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCTGAGTTCTAAATAGAAGTGCAACACCTTGTCTAAGGTTGGAAGTGTTCAGTTTCTAACTTAAGAAGGTGTTGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 96613-94778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBA010000008.1 Bifidobacterium longum strain D33t1_170424_E8 NODE_8_length_96721_cov_65.2497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 96612 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 96548 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 96484 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 96419 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 96354 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGGTT 96290 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 96226 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 96162 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 96098 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 96034 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 95970 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 95906 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 95842 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 95778 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 95713 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 95649 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 95585 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 95520 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 95456 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 95392 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 95328 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 95263 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 95198 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 95134 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 95069 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 95005 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 94941 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 94877 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 94813 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 29 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GGACGAGGAGATCGCCAAGCTACAATCGAAGGCAGCCAGCCCGAACACAAGCGTTGCGCTTACAAATTGAATCCGGGCAGCAGATAATTGTTTACGCTGTTGATATTG # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCAGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //