Array 1 86059-87502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEOD01000016.1 Bifidobacterium pseudocatenulatum IPLA36007 BCPBCP000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 86059 33 100.0 33 ................................. TTGGTGAGCTTGCCGGAGCCGGTGGCCGCAGCG 86125 33 100.0 37 ................................. ATCATAGTGGACTATGTGACAGGCATTGCAAAAGCAA 86195 33 100.0 35 ................................. TCGGCTGAATGTGTTTTGCAATGCTTGGGAACGGT 86263 33 100.0 34 ................................. TTGATGACATACGCCGACTCCGCGCCGTCAATCG 86330 33 100.0 36 ................................. ATCGGCAATTGCTGGGAACTGCGCAAACGAAACGAC 86399 33 100.0 34 ................................. CGTATTTCGCAATCACAAGGGACGACAACAAATT 86466 33 100.0 34 ................................. ATCATGCGTCTCACGGGCTTCCATGCCCTCGATA 86533 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 86601 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 86668 33 100.0 35 ................................. CGTCAGAACATTGTTCTTAGTCATCAAATCATTAA 86736 33 100.0 33 ................................. ATACGCAGCGCAAGGCGACTACCAGAACGCCAT 86802 33 100.0 33 ................................. CTCATGCAGGACGGCGACCCGCTCAGCGCCGAC 86868 33 100.0 36 ................................. GTTAGTCACCTGCGCTTTTTGCTGGATGAACTTATC 86937 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 87003 33 100.0 32 ................................. TGAAGGGAGCATGGTGATGACCGTGGCTGCCA 87068 33 100.0 34 ................................. ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA 87135 33 100.0 35 ................................. CCCGACAAGCGTAGGGGCGTGCACCGTTTTATGGT 87203 33 100.0 33 ................................. ATGCGACTCGCTACGCCGTGCCCACGTCTGGAA 87269 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 87337 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 87404 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 87470 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 22 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCATGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //