Array 1 16678-14827 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000032.1 Meiothermus cateniformans strain JCM 15151 contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 16677 37 100.0 36 ..................................... AGCCAGCACGCTGTAGGGCGTGAGCTGGGGGCCCGG 16604 37 100.0 35 ..................................... AATATGAAACCGTTCTGGCAATCAAAAACCTTTTG 16532 37 100.0 37 ..................................... GATCGGGACTTCGCCCCACCCCTTGCAAACAGGGCAG 16458 37 100.0 38 ..................................... TAACTAACGGCCTTGTAGCGCGGGTCCCAGAACATGGA 16383 37 100.0 37 ..................................... CATGGAGGATGGCCGCTGTTATGCCGGCGACGACGAG 16309 37 100.0 35 ..................................... CTCAACGCTGATCCAGGCGGTGGTGTGGTTGTTGC 16237 37 100.0 34 ..................................... GGAGATTCCTACGGTGGGCGGGGAGACGGTGCCG 16166 37 100.0 31 ..................................... CTCGATTTCGCCTGCGCCATTGCAGTGGAGG 16098 37 100.0 32 ..................................... GGCACCGTTACAATAGTGCACCACACGGGGAG 16029 37 100.0 35 ..................................... AGACAGCGGGGCCGATCTTCCGGCCCCTTATAAGC 15957 37 100.0 34 ..................................... TTGCCGCCCTGATGGAGAACGCCCTGCTCCTCTC 15886 37 100.0 38 ..................................... TCAGGCTGTACCCGCGCCCCCTTCGCCGCTTCCGGCTG 15811 37 100.0 35 ..................................... ACCGTCTTGCGCCCGAGCGTTACCCCCTCGGGCAG 15739 37 100.0 37 ..................................... TCGGGGTGCAGTGAGGGGGGCAACACGTCCTGCGTCG 15665 37 100.0 36 ..................................... GTCAGTTTGAAGCGCACGACCGCCACCCACGGTGCC 15592 37 100.0 36 ..................................... CTATCGGATACCGGGCTCTTGACAGATGCCCAGCGC 15519 37 100.0 37 ..................................... TGGTCGAACTCGACGGGCAGAGATATTTGCTCCCCAC 15445 37 100.0 35 ..................................... ATCCAGAAACTTGCGCCATGCAAAAGCAGCCAATC 15373 37 100.0 35 ..................................... TGGGAACAGAAATGGTAAAAAGCACGCAGTTTGAT 15301 37 100.0 36 ..................................... CAGGGTGCGCTCGCGGATGCGGCGGGCGAAGCTGTC 15228 37 100.0 36 ..................................... TTATTGGTTGTGGCCCCCACCGGGGGGAAGCCCAAA 15155 37 100.0 36 ..................................... TCTCCATCGACTACGAGGACTCGGAGAAGGTCAACC 15082 37 100.0 37 ..................................... TCGAGGTGGATGCGCATCACCTCGATCATTGCCTCGT 15008 37 100.0 35 ..................................... TCTCGAAAATCAGCAGTCCGCCTTTGGTCAGACCG 14936 37 100.0 36 ..................................... GCGCAGCAGGACGTACTCGGGTTCACCGAAGCAGGT 14863 37 89.2 0 ..........................CA..CA..... | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.6 36 GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : TAGGTATGGAACGGCTGGATATCCTGGTAACCTACGACGTAAACGTAACCTCGGCAGACGGCCAGGCGCGCCTGGCCCGGGTCGCCAAGATCTGCAAAAACTTTGGTCAGCGGGTGCAGTTGTCGGTCTTCGAGTGCCGTGTCTCGCGAGCCCAGCTCGAGGACATGGAGGCCAGGCTGCTAAAGGTGATCGACCCCGACAAGGACAGCCTGCGCATCTACACCCTGCCCGGTGGCCGCGATAAATGTTTGCGGGTACACGGCCAGGACAGGTATATTGACTTCGACGACCCACTGGTGGTCTAAGCGGCACCTGCTTTGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGCTTTTCCCTTACCTTCCCCCACCCTCTGTCGGAAGCCTTTTTGGGGGGGTTCGCGCAAATGGCCTATTGAAACCCGTCCTGCACGCACGCTAGAATGAGGCC # Right flank : GAATGGGGGTTAGTCCTGGTCTGTAGACTCGCCAGGGTTGGGGGCTTCCTTGCGCGGTTTGAGCAAGGGAAAGAGAATCACATCGCGGATGCTTTCTTGATTGGTGAGCACCATAGCCAGCCGGTCTATGCCCAGGCCCATCCCGGCGGCGGGGGGCATGCCGTACTCGAGGGCCAGCAGAAAATCCTCGTCAATCTCGGGCTCTTCATCGTCGCCGGCTTCGCGACGCTTGGCTTGTTCCTGGAAACGGGCGCGCTGATCGAGGGCATCGTTTAGCTCGGAGTAAATAGGGGAGAGCTCGAAGCCTGCCACAAACAGGTCGGCGCGCTCGGTGAGGTTGGGTTTGTTGGGGTCGCGGTGGCGTTTGACCAGGGGGCTGATAGCGAGGGGCACATCCACCACAAAGGTAGGCTGAATCAGGGTGTGCTCCACATAGTGCCCAAACAGCTTGTCCAGCAACTTGTAGCTGGGTACGCTGCGCAGCTCGGGGTGCTTCTGAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 12644-15176 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000048.1 Meiothermus cateniformans strain JCM 15151 contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12644 29 100.0 33 ............................. GCCAGGGAGTCCCGATAGCCCTGGTCGAGCGGC 12706 29 100.0 31 ............................. CCCAGGCCCGCCAAGCCCAAAGGGGGGAAGC 12766 29 100.0 32 ............................. ACCGCGATTTTTTTGATTTGGGGCTCGGTGAT 12827 29 100.0 32 ............................. GTCTTGGTGGGGATTTCCATATTATCCTCCCC 12888 29 100.0 32 ............................. GGGATGTTTAGCAGTTGTTGCATGATTTCTCC 12949 29 100.0 32 ............................. CGTTCGGGATTACCACCTGGCGCAACCCCAAA 13010 29 100.0 32 ............................. GGGGTGTTGTGCAATTCGATCACTTTCCGGGC 13071 29 100.0 33 ............................. GCAGACAGCGCCTCGACGCTCTGCCCCTCGGCC 13133 29 100.0 32 ............................. CTGGTCAGCCTAGCCGGGGCCACCGAAGAGGC 13194 29 100.0 33 ............................. GGGGCGACCTGCTTATCATGCTCCTCCTGATGC 13256 29 100.0 32 ............................. GGTAAACCTTGACCCCGCCGACCTCAAGGTCA 13317 29 100.0 32 ............................. AATATCCAGTTCCGATAGCACGAGCGACCCAA 13378 29 96.6 33 ............................A GGTGTCGTCCTGATCGGCGGCGCTGACCCGGCC 13440 29 100.0 33 ............................. CTACCCCGACCTCCTCGAGGGCCGCCCCGAGCC 13502 29 100.0 32 ............................. CCGTAGCGCCGGGGGTCGCTCGAGGCGTGAAA 13563 29 100.0 32 ............................. TGAGCACCCAGACCCAGCTAGCGGCTCGAGGG 13624 29 100.0 32 ............................. TCTAGCTGCACGTCCAGCGGCCAGGTCTGTGG 13685 29 100.0 32 ............................. TTGCGCTAGCTCATCCTGGGATAGCTGCGAGA 13746 29 100.0 33 ............................. ATGCCCCAGTCCAGGCCCAGGGCCTCCACCCCC 13808 29 100.0 32 ............................. TTTGGGCGGCACGAACTGGCGGCCGTCTTGCG 13869 29 100.0 32 ............................. CTCCGCTCGCCCAGGGGCGAGTTCTGGCTTCC 13930 29 100.0 32 ............................. CTGTGGATGTGGGTTTGGTCAACCTCGACCGC 13991 29 100.0 32 ............................. ATGCAGCGAGTTTTCAGGAAGAGCCGACCAGT 14052 29 100.0 31 ............................. AATCTAGTAGGGAGGGAACTGCGTAGGCTTC 14112 29 100.0 32 ............................. GCCGCTACGACGGCCTGGTGGCGGACGAGGAG 14173 29 100.0 33 ............................. CATCCTGTTCGGCTTCGGCAAGCTCGAGGGCAC 14235 29 100.0 32 ............................. ATGGAGATAGCCGCCGGGCAAGCCAACCAGGA 14296 29 96.6 32 ............................A GTTGTTGCAGGCGCCGGCCCCGTGTCGCTACC 14357 29 100.0 32 ............................. ACTGGCACAAGTACAGCAAGAGCTGGCACCGG 14418 29 100.0 31 ............................. AATCTAGTAGGGAGGGAACTGCGTAGGCTTC 14478 29 100.0 32 ............................. ATGGAGATAGCCGCCGGGCAAGCCAACCAGGA 14539 29 100.0 32 ............................. TCCTGCTTGATGCGCGGAATATCCGTGGCGGT 14600 29 100.0 31 ............................. CCACCAGGAGCTGGCTGAGTTTGCAAGTGGC 14660 29 100.0 31 ............................. CAATGCTGCTCCGTCTGGGGATACTACTGCT 14720 29 100.0 32 ............................. CAGGATGCCGTTAGGTTCTGGGCCCGCGATAA 14781 29 100.0 32 ............................. GTGGAACTGGAGCTAGCCGCCGCCTGGGGGGC 14842 29 100.0 32 ............................. CCAGGCGCACCATTTGCTGCTGTTTCTGCTGC 14903 29 100.0 32 ............................. ATGTGCGCGACGGGAGCATCGTGACCGCGCAT 14964 29 100.0 33 ............................. CCGGCGCACACCAAAATGGGAAGCGTCCAGTAC 15026 29 100.0 32 ............................. CCAGGACACGCTGTACAAATCCCGCCTGCTCC 15087 29 100.0 32 ............................. GTTGGCAACATCGAAAACTCTACTGCCGCCAA 15148 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCTTCGACGCGCTCGAGACCCCCGACCCCTACGCCGCCGACCCTGCGGCCCCAGGTGAGCTGTGGGACCCCGATGGCCCGGTTCCGGGCGGGATAAGCTATGGTAGTGATCGTTCTGGAGAAGGTGCCGAAGACCCTGAGGGGTGAGCTTTCACGCTGGATGCTCGAGGTGAGCACGGGCGTGTTTGTGGGCAGCGTTTCGGCACTGGTGCGCGATTTGCTCTGGGAAAAGTGCATTGCCAAGAAAAGCTCGGGCCGCTGCTGCTTGCTCTACCGCACCAACAACGAACAGGGCTTTGCTATTCGAACCCATGGCGATACCACCCGCACCCTGATAGACTTTGATGGCCTGACCCTGGTAGCAGTGAAAAATGCCGAATGGGAGCGTATGCATCACAAGCGAAGCAGAAAAAGCAAACCAGGGGCGAATCTTGACAAAGTAACTCGGGATTCTGACACTTCCGAGGGGTCTAGCAGCTAATTTTGCTGTTAGAATCAAGT # Right flank : GCGCGGTTTGCGGTATGGTAGAACCCATATGTTTCGCTCGAGCCGCACCCCCACCGGAGGTGGGGTTTTTTTGGAGATGGACAGGGCCAAGGCCGAGGCCCGCGCCCGGGGCCTCGAGGTGATCGACCTCTCGATTGGAGCTTCCGACCTGCCCCCGCCCCCGGAGGCCCTGGAGGCCCTTAAGCAGGCCATAGACGACCCCTCTACCTACGGCTACTGCCTTAAGTCGGGCACCCTGCCCTTCCTCGAGGCCGCCACCGAGTGGTACTTCCGGCGCTACGGGGTGCGGCTCGACCCCCGGCGCGAGGCCCTGAGCCTGATCGGCTCGCAGGAGGGGCTGGCCCATCTGCTGATGGCTGTGGCCGACCCCGGCGATGTCCTGCTGATGTGCGATGTGGCCTACCCCTCCTATTTCGGAGCGGCCAAGGTGGCGGGCCTCGAGGTTCACCTGATGCCCCTGGGCGAGCACCTGCTGCCCGAGCTGGGGGCGGTGCCGGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1172-914 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000053.1 Meiothermus cateniformans strain JCM 15151 contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1171 35 100.0 36 ................................... TTGGGTTTACGCATAACAAACACCCCTCACGCTTGG 1100 35 100.0 42 ................................... ACTGACCTTGCCTCTACATCCGTGCTTGGCGGATATCGGCCA 1023 35 100.0 40 ................................... CCGACCGCCGCCGCGATGTGTTCTGCCGCCCGCGTGACAT 948 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 100.0 40 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : ATCCGGGCAAACTGGGCCAGCTCGAGGCGGGTGGCCGCTTCGGGCTTGGGCAGCGCCTCCAGCAGGTACTGCTGGATGGCCGCCCGCACCTGGGCCGGAGAAAGATCGGCAACCATGCCCAAATACTACCCCCACACGCCCCCGCCCGACACCGCCTGCCAAAAATGCCTGCGCGATCGCACCCACCCCACACCAAACTCAACCCGAAACCAGTCCAGAACATCACGGAAGCACTTTCACCAAATAACCCATTCTGTTTTGCGCAAAATGCTATAATGCTCCCGTCGAGCAGTTCGATAGCGCACTTTGAAAGCCAGCTTTTGCGATGAAAAAGGCAAACCCACGCCACAAAAAATCTAAAAGCGTGGAAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGAGCTGTGGATAACTCCACTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGCGTTTAACGGGGTATGCT # Right flank : AAAGCCAAACTTCGTGGCTTGGCGCGGCGAGGAAGAATGCTTCCGTGTGCCAGCGTGAGGGTGGGAACTGGTGGGTTTTCTGCTATTCCAATAGCTTCATCAGTTGCTCGGGGCGGATTATCCGGGTTTTTCCCACTTTTTTTAGGGATAAGACGTGCTCTTCGTCCAGACTAACCAGGTAGTTGGCTTTGCCTTCGGTGGCAATAAGCAGTATCAGGTCGTCGTCGGTGTCTTGTGACAAGGGTTTGGCTTTACCGTGCGGCACCAGCTCGGCTCTGGCCTTGAGGGTGTTGATCATTGCCCCGGCTTGGGCAGGCCGGATAATATCTTTGAACTTGGCGTAACGGCTTACGCGACGCAGCTCAGCAAGCTGTGCCCTGGAGGTGAGGAGGGTAAACTGGCCGCTCCGCCAGGCCCAGTACACCCGGGCTACGCGGGACGCAGGGGCAATGAGAGTAGAAATGTAGATGTTGGTGTCGAGGACTACCCTCACTGTTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 10487-10820 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000058.1 Meiothermus cateniformans strain JCM 15151 contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10487 37 94.6 37 CC................................... ATGTGGGCCTTGAGCGATGCGGCCAGGGCATCCAGAG 10561 37 100.0 37 ..................................... GAGCCACAGCCGGGACAAACCCGGAAGGACGTATCCG 10635 37 100.0 37 ..................................... CCGGGGGTTGAAAGCTCGCTCTCGGTTGGCTGATAAA 10709 37 100.0 37 ..................................... TTACCACTGCCTGGATCTGCCCCCGCTCGTCCCTAAT 10783 37 91.9 0 ............................A....G..G | G [10815] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.3 37 GTTGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : CCATCCTGGGTCTGGTGCCGCGCATCGTGCTGGCGAGCCTGGTGGCCTACTGGGTGGGTGAGTTTGCCAACAGCTATATTCTGGCGCGGCTTAAGGTAGCCACCCAGGGGCGCTTTTTGGCCTTGCGCACCATCGGCTCTACCCTGGTAGGACAGGGCCTGGACACCGCCATCTTCCTGCTGGTGGCCTTTTATGGCATCTGGGACAACAGCCTGCTCTGGACGGTGTTTGTTTCGAACTACATCTTCAAAGTTGGCATAGAGGTGCTTTTTACACCCCTTACTTACGCCGTGGTGGGATTCCTAAAGCGCGCCGAAAACGAAGACTATTACGACCGCGACACCCGTTTCAACCCCTTTGCATTCCGCTAAGCAACTAGCCCCGCATATCTGGTAGAATGCGCGAACCCCAAGCAGGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCCAGGGGACATTGAAAACCCGCTTTTCCTTTACCTTCCCCCAC # Right flank : GCATGACCCTTCTAGAGGAGTTGGGCAGGTTTTTTCCGCCGGGGCGCTTGTTGCACAAGCCGGGTGAGCTGGTGCCCTACGAATCCGACGCCCTTACGGCCTTCCGGGCCCGGCCCCTGGCGGTGGTGCTGCCCGAGAGCCACGAGGAGGTGGTGCAGGCGGTGCGCTGGTGCGCCAGGCACCGGATACCCTATGTGGCCCGGGGCTCCGGCACCAGCCTTTCGGGGGGCTCGCTACCGATTGATGGCGGGCTTTTGATTGGCCTCAACAGAATGAACAAACTGCTGCGGCTGGATCCGCAGGAACGCATCGCGGTGGTGGAGCCGGGCTTTATCAACCTGCAGGTCTCGAACGCTGCCGCCCCCTACGGCCTTTACTATGCCCCCGACCCCTCCTCCCAGCCGGTCTCGACCATTGGCGGGAACCTGGCTTTTAACTCGGGCGGGGCCCACTGCCTCAAGTACGGCATGACCTCCAACCACGTGCTTGGGGCCAAGGTG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 13866-13035 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000077.1 Meiothermus cateniformans strain JCM 15151 contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 13865 37 100.0 36 ..................................... GAGGGCCTCCAGCCGCCGGGAGTGCTCGTCGAGCAC 13792 37 100.0 35 ..................................... ACCGTCGAATGGACCCTGACCCTTACCTAGGAGAC 13720 37 100.0 35 ..................................... TTTCCAGGAGGATTGATAATGAAAAGCGGCTTTAG 13648 37 100.0 35 ..................................... CATCTCAGCGCGCTGGGGATGATTGCAAATTGCGC 13576 37 100.0 34 ..................................... GGGCGAGGTCAAGGCGGTGCGCCCGGAGTACAAA 13505 37 100.0 35 ..................................... AAACTTGTTGGGCCAAGCCAAATAGTTCTTGTAGA 13433 37 100.0 36 ..................................... CGGTGGGCTCCCCGCGCTCCCCGTCGTCCGACTTGC 13360 37 100.0 35 ..................................... CTGGCGCAGCCGCTCCTTGTGCTCCGGCGGCACCC 13288 37 100.0 36 ..................................... CTAAGCCCCTGAGCAGGGCATTGCTACCCGAACGGC 13215 37 100.0 35 ..................................... CTCCCAGCGGCGATAGCGAGCCCGCATCCGGCGCT 13143 37 100.0 35 ..................................... GCACCTCCGGCAACTCTGCCGCCTTCCAGCAATCC 13071 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 100.0 35 GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : ATTTCCGTGATGTGCTCATCAACCTTTTACATCTCCACAACCTATCCCCACTGCGCTCCATTCGCTACTTCTCTGCCAACCCCAACGAACTCTACCAGTTGTTGTGCCCTTCGTGATAAAAGCCTAGTTAGTTTAGAGGCTTTTATCGTATACGCCGTATGATACTATGAAGCCGAGGTATGCGCGATGGAGGCATCCTCTTTTTTGTAGCCGGTCTCACCTTTGCGCGAACCCCAAGCAGGTGGCAAAACCCGGGGGGGTTCGCGCAAAGCGAGAAAGCGGCTAGGGGACATTGAAAACCCGTTTTCCCCCCACCTTCCCCCACCCTGCGTCGGAGGCCTTTTTGAGGGGGTTCGCGCAAACGGCCTCTTGAAACCCGTCCAGCACGTACGCTAGGATGAGGC # Right flank : CCTGCTCACGCCTGTTCTCGATAGCCTGGGTGGATCCAGGAGTGGCGCGACTGGCTGCTTTCCATGGGCTTTGGCCGAAGAAAAAGCGACACATCCCTGCCCGCCCAGGCTCTACCGCTTCCTGTGGGCCCTGGAAGAGCAGGTCGTCGCCCTGGAAAAGGCCCTGCCCTGGCCTTTTTCGGCAGGGGTCACTGGGCGATAGAGAACAGGCTTCATCACAAGAGGGATATCGTGCTGGGAGAGGATGCCTGTCGCACCCGCAAAGCGGCCCAGGCCCTGGCCGCTTTGCGCAACCAGCTGCTGGGCTTCCTGCACCGGCTTGACGTTCCCGTGCTGCGCAGTGTGCGTAGCTTCTCCGTCAATCCCATGCCCCTCTTTCGCTGGCTCAGTGGGTGTATGTGAGGGGTGCATACGATAAAAGCCTGTGGCTTTACGAGTGATCGCTTGCTCATCGAGCCTTTTATGTTAGACTCTGCAACTGAGCAGACCTGACATACAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 4762-4363 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000119.1 Meiothermus cateniformans strain JCM 15151 contig_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4761 37 100.0 37 ..................................... AATGGAGTAGGGAATGCGCGGGGCCCCGAATGCATGG 4687 37 100.0 35 ..................................... CTCGGCTACCTGGAGGTGGCCGGGTACAGGCACCC 4615 37 100.0 36 ..................................... CTGCAAACGAAGGTGAAAGGGGTCTGCGGAGGCACC 4542 37 94.6 33 .........A.....A..................... CGCTTCAACAGCTTGTCCATTTCAGGGCCAGAC 4472 37 100.0 36 ..................................... TGATCCTCCATCCAGGTTTTTAGCAGTTTCTCGGTT 4399 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.1 36 GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Left flank : TTATCTGGAGCACTACAACCTGCACCGGCCGCACATGGCCCTGGGGGGGTTGGCGCCGGTGGAGTACCTGGCTAAGCTACAGGAGGTGTCGGTTCCCCTGGAGTCTCAAATGTATTGACCGATTACAGCCTCTTGAAACCCGTCCAGCACGCACGCTAGGATGAGGC # Right flank : TACTACGAAATTTCAAATATCCGTCATTCCCCTCTCATCAAAAAGCCCAATAGGATTAGAGCCATGCGCTTATGCATAGCCCTTCTGGTTGCTCTGGGCCTGGCCTGGGCTCAGAATACCCCCGCACAGACAAACCCCTATGCAATTGCTCGCATCGTTGCGTTGGGTCAAGAACGTGCAACGGTGCGTATTGGTAATCAGGTGGCGGAAGCTGAGATGCCCACAGACGGAATCGACTTTCGCGTTGGGCAGTTGGTAGTGGTCTATCAGGCTGACGGAAAAACCTATCTTACAGAACCCTACCGCTTGCATTATCTGTGGGCTTTACTTGGATTGTTTGTGCTTTTCACCATTGCACTAGGACGCGGTAAAGGCTTGCGAGGGCTGCTTGGCACAGCAGCCAGCATGGGCGTTCTGGCCTACGTTGTGGTGCCTCAAATTGCCGCAGGCAGCAACCCTTTACTGGTTACCTTCCTGGGTGCGTTCGGCATTTTGGCGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : NA // Array 1 10592-8695 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKX01000002.1 Meiothermus cateniformans strain JCM 15151 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 10591 35 100.0 38 ................................... CTAAGGGCTTTGGAGAGGTTGACCGAACGCCCCAACTC 10518 35 100.0 41 ................................... ACGCACCTGGAACATAGGTGTTAGTACCGTCATTATAGACT 10442 35 100.0 40 ................................... CGGCTCATCTCGTCCGTACTGATCCCCATCCACAACTCGC 10367 35 100.0 40 ................................... AACAAACCCTTCCCAAGCCTCCCTCGACAGGGTCATCAAG 10292 35 100.0 38 ................................... TCGTCGAACGTGACGGTCTCCTCCGTTGCTTTGCTGTG 10219 35 100.0 42 ................................... TTGGGCGGGCAGGGGGCGCGAAGCGCCCCCACACACCCCCAG 10142 35 100.0 38 ................................... CTCCTGGATGTTGACTTGCTTGTCGGGTTCAGCCTTCA 10069 35 100.0 39 ................................... CCGAGCTTATGCCATCTATCAGCCTTGCGTACTGCAAGA 9995 35 100.0 41 ................................... AGGGCTCGGGTAATGTCCTCCAATACCTCAATAATGTAAAG 9919 35 100.0 42 ................................... TCTTCAGTACCAAGTTCTGACGGCTTGGTACTAACCTCCAGA 9842 35 100.0 37 ................................... CTGACCGAGATGGCTGCCAATAATCTGCTTCAACATA 9770 35 100.0 37 ................................... AAATCGCTTTAGAGACCCCTGCTGCCAAGGAATGATG 9698 35 100.0 39 ................................... CGGGCTAAGTTTACCCTCACCTCCAGTATACACCGTACA 9624 35 100.0 37 ................................... TCCTCGTTACCGAACTCGGACGGCTTGGTGCTCAGCT 9552 35 100.0 39 ................................... AATGCTGAGTGCCTCTCTATAAGTGGCGGCCGTAGCCAC 9478 35 100.0 40 ................................... TAGAATATTCTGGTAAAGCTATTCTGTAAATTCAGAAAAA 9403 35 100.0 38 ................................... GAGTTTTACCGATACCACGATCTCCTAAAAATAGTGGA 9330 35 100.0 41 ................................... ACGTCGGCGGCAGTACTACCTACGTCGAGGGCGTCGACTAT 9254 35 100.0 42 ................................... TATTTGAAAAAGCAATGAAAATAATTGCTAAAGCCGCCTTAA 9177 35 100.0 39 ................................... CGGCTATCCATTTATCATAATAGGTCATTGAGCCCCAAG 9103 35 100.0 39 ................................... AGCACCACCCGGCGAGATAATCAACTGCCGCTGCACGAT 9029 35 100.0 40 ................................... TACAGCAGCCTGCTCAAGCTGGCCCAGGCCCAGGGCTATC 8954 35 100.0 42 ................................... TTATTGGTTTTATAAAGTCTACCAGTAGAGTATAAGTATCGT 8877 35 100.0 40 ................................... AAAATCCTACGTAGACAGCGCTATTGAGGGTTTGGCGTGG 8802 35 100.0 38 ................................... CAGATAAACCCCCCCAACTTCTGGATGTCCATCATTTT 8729 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 26 35 100.0 40 GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC # Left flank : GCAGCTTTTGCAAAAGAAGCTCGAGCTCTCCCAAGACAGCGTCCGCATCTACCCCATTGGCGGTACGGTGGAGGTGCTGGGTCTGGGCCGCCTCACCCAAAGCCCCGACTTCCTGATTCTCTAGCCGTTACACCCCCCGTAACCTTGCCCCCACCCGCCAAAAATGCCTGCGCGATCGCACCCCACCCCACACAAAACCCAACCCGAAGCCAGTCCAGCACAGCACGGAAACACTTTCACCAAATAACCCATTATGTTTTGCGCAAAATGCTATAATGCCTTTGTCGAGCATTTCGACAGCGCACTTTGAAAGCCAGCTTTTGCGATGAATAAGGCAAACCCACGCCACAAAAAATCTAAAAGTGTGGGAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGGGCTGTGGATAACTCCAGTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGTGTTTAACGGGGTATGCT # Right flank : TCGACTGGGCCAGGCGGCGCTGTGGCGGGGCTAACAGGGGTGAGCTACCATGAGATTATGGTTCTGCCCACTGCTTTAGAAGTGGTAGTTGACCATCGCTTGTCGCAGGTGGGGGGGGTGGCAGAGCCATCCCAGGGTTGTAAACAAATGCCACGCAAAGGCCGCGTGAAGTCTGGTAGATTGGGGGCGTGCAGGAGCAACTAAACACGGTTTTGATACTGGGGGTGGGGCAGACCCTGGAGCCCCTCGAGTTTGCCCTGACCGAGCACACCCCGCAGGGGGTGATTTTTATAGCCAGCCAGGATTCGCAGGTGGTGTCGGCAGAGCTTATCCAACGCTATGGGGAAGCGCTGCGCTTTCACACCCTGCTGCTCGACGACCCCGAAGACCTGGGCGAGGTGTTTCGCAAGGGGCGGTTAGCGCTGCAAAAGGCCCTCGAGTGGGAGGCGCGGGCCATTGTGGCCGATATTACCGGGGGCACCAAAACCATGTCGGCGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //