Array 1 20724-20357 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFF01000018.1 Bacillus safensis strain G25-36 G25-36_contig000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 20723 32 100.0 34 ................................ AGTACCAAAAAAATCTGATAATTTAAGTTCTGCT 20657 32 100.0 34 ................................ TTTTCGACCATTATATCTTTTTCCTCATTATTTG 20591 32 90.6 38 ........C.TT.................... CTTTCCATCCATTTCAATTTTCTTTCGGATGGGGTAAT 20521 32 90.6 34 ........C..T.......T............ CTCTACTTCAAGAGCTGAGTGTTGTAAATTCTGG 20455 32 90.6 35 ........C.........AG............ TTATGTATTTCCACTACTGTTCCTTCCCCATATAA 20388 32 93.8 0 .........A....A................. | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 94.3 35 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : ACGATCATCCCCTAAAAAATGTTATATTAGGGCGGAAATCGGAGTCGCATTCTACATGAGTGCGTGGATTGAAACAATTCAAGGATTTTCTTTTCATGAGTGGTTAATTTCGTCGCACTCTACATGAGTGCGTGGATTGAAATCATTTTGCATCCACAGTACGCGTAAAGAATTTTTGTCGCACTCTACATGAGTGGATGGATTAAAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACCAAGAAAAAGTAGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : AATTCCCTCCATCCATGACAATTTTTTGGCTTAGTCGAACTCTACATGAATTAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGAGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTTAGGTGTGAAAACAAACTTCTATATAGAAACTTAAGGGTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATACTGCTTCAATGTATTTTTTAACAAGCAGATTGGTCGCACTCTATATGAGTGTGTGGATTGAAATATGATCATTAATTCTAGTGAATTGCCCGTTACGCGTCGCACTCTACATGAGTACGTGGATTGAAAT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28955-28791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFF01000018.1 Bacillus safensis strain G25-36 G25-36_contig000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28954 32 100.0 35 ................................ TCCAGTAGAATAAAAGACATCATAATCAGAAGTTG 28887 32 100.0 33 ................................ GGTCAACAGTCCAACATGCTTATGCAAATCGAG 28822 32 84.4 0 .............A.......C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 94.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGGTCGCTCTCTACATGAGTGCGTGGATTGAAATAGATCACGGGCATATTTTTGTATTTTCCCCTTTGTCGCACTCTATATGAGTGCGTGGATTGAAATATGAATCGTTCTTTTTTGGCGATCGCATTCTCTGGTCGCACTCTACATGAATGCATGAATCGAAATCGTCTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGAAACATTCGCATCTTTTTATTCAACAAAAATTGGTAAAAATGTATATTTCGTGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTCTCTTAAATGGGTATGGCCACCTCAAATCCATCTTCTTACAATCTCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGTTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAGGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTA # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 29585-29290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFF01000018.1 Bacillus safensis strain G25-36 G25-36_contig000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 29584 32 96.9 34 A............................... AACTCCTTATCCTCACTTCGTTCCGGTATCGTTG 29518 32 100.0 34 ................................ AAGACGCTAATATCAGGGAATGCGTCAGGCGTTG 29452 32 96.9 33 .....T.......................... AGATCACGGGCATATTTTTGTATTTTCCCCTTT 29387 32 96.9 34 ...........T.................... ATGAATCGTTCTTTTTTGGCGATCGCATTCTCTG 29321 32 87.5 0 ................A...A..A..C..... | ========== ====== ====== ====== ================================ ================================== ================== 5 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTCATTTACCAAGAGGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCAGGACATTCGCACCTTTTCGTTCGACAAAAATGAGAAAAAATGTATATTTTATGAAGGGGAAAACAAAATTCTATATTGAAATTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : CGTCTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGAAACATTCGCATCTTTTTATTCAACAAAAATTGGTAAAAATGTATATTTCGTGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCCAGTAGAATAAAAGACATCATAATCAGAAGTTGGTCGCACTCTACATGAGTGCGTGGATTGAAATGGTCAACAGTCCAACATGCTTATGCAAATCGAGGTCGCACTCTACAAGAGTGCGCGATTTTAAATG # Questionable array : NO Score: 6.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //