Array 1 287409-285142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLN01000001.1 Campylobacter fetus subsp. testudinum strain 12S02847-1 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 287408 30 100.0 35 .............................. GCTCGTACGGCACGGCATTTCTAAATTTCATTTGG 287343 30 100.0 36 .............................. TGAGTTATGTGACCTATGGGTTCTCCTTTTATGACT 287277 30 100.0 35 .............................. TTTACTTTTAGAGTTTGTAAAGTAGCGCTCACAGT 287212 30 100.0 37 .............................. TCTTCCCCATTTAGAGGCTTTTGCGTGTTCTCATTTA 287145 30 100.0 36 .............................. AGATCAAAATCTAGCCCGTCTTCTATAGCCCTATAT 287079 30 100.0 37 .............................. GTAATATAAAATGTATATTTTTTAGAAAAAATTACTA 287012 30 100.0 36 .............................. TTATTAGCAACCACTTTAAAAGCCTCTTGCGCTTTT 286946 30 100.0 36 .............................. GCAAAATCTCCATACTTTTTCTAAAATTCGCCATCG 286880 30 96.7 20 ...............G.............. GGTGGTGAAGGTTCTGGTGG Deletion [286831] 286830 30 96.7 35 ...............G.............. ACCTTATAAAGGTGCGCCTAGCGCTATGAAGTCCA 286765 30 100.0 36 .............................. TCGCTAAACGGTAAGGCTACTGTGTATTTTAGGAAT 286699 30 100.0 35 .............................. AAATTTATAGTGACACTAGCACTCCGCTACCGCCT 286634 30 100.0 35 .............................. CATACTTAAAAATCTTATCTCGCAGAGATTTTACT 286569 30 100.0 37 .............................. CACATATTCGTATCTACAATTACGTTATAACTTGCTC 286502 30 100.0 36 .............................. CGGCTTTTAAATAATGCGTTTATTTCGCCCTGCAAG 286436 30 100.0 35 .............................. GTTGCAGCGTACGTGCATTCCGCACCTACTTTAAA 286371 30 96.7 37 ...............G.............. ACGATTATGGCGTCTCTGATGTATCTTCTTATAGGAT 286304 30 100.0 35 .............................. AAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 286239 30 100.0 36 .............................. ACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 286173 30 80.0 4 ..................A..ATA.C...T TTAA Deletion [286140] 286139 30 100.0 35 .............................. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 286074 30 100.0 35 .............................. AATATGAGACAAGAAAAACAAAAGGAGGTTAGATA 286009 30 100.0 36 .............................. TAGGCTCTAAATAATTTAATATATCCATTACGGAGC 285943 30 100.0 35 .............................. AAGCTTAGCTAATGGCTATACATTATATAGTTGGC 285878 30 100.0 36 .............................. TAACTCAAGTTTGCCAAAGTAGCAGAGTATAGACTG 285812 30 100.0 36 .............................. TCTCTATCTCCTTTTTTAATATAGTATAATTATAGT 285746 30 100.0 35 .............................. TCAGCAAACAGAATAAATAAAATCAAAACTTAAAA 285681 30 96.7 36 .............................T TAGACGTATAATCTAAAATGAAAATTCCAATCTCTT 285615 30 96.7 35 .............................T CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATA 285550 30 100.0 36 .............................. ATAAAGCCAAACGTGATATGATGTATAAAATGACTG 285484 30 100.0 36 .............................. AATAACTGGTTAAGCAGGGGACTCCCGCAAGAAGTT 285418 30 100.0 37 .............................. AAAACAAAATTAAGGAGTAATTTATGTATAAAAAAAT 285351 29 80.0 18 ..............G.....-....TCTC. TTATAAGGAATGTTTGAG Deletion [285305] 285304 30 96.7 37 ...............G.............. GGCGTCTAAAACTACCATAGCAATGGTGATTTTAAAC 285237 30 96.7 36 ...............G.............. CCGTCACTCGCATACACGCCTAGCTTATTATTATTT 285171 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 98.2 34 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAAATAAAGCGTTTTGCCGAAGTGAAGTTTGGAAT # Right flank : CTAAGACTTACACCTGTTTTTGATACATTAGAAAACAGTTTGCTGATAACAAAGCTCATATTAAAATCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAACCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTAAACCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1129-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLN01000026.1 Campylobacter fetus subsp. testudinum strain 12S02847-1 contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1128 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 1063 30 100.0 36 .............................. TGAAACTTTTAGCGACGATCTTATAATGCAGCACGG 997 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 932 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 867 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 802 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 737 30 100.0 36 .............................. TTATAGAAATATTGGAGATAAAATGACAATTAAAAT 671 30 100.0 36 .............................. TTTACTTTCTCTCCAAACTCTTTTAACTTATCACTA 605 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 540 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 475 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 410 30 100.0 36 .............................. TAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT 344 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 278 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 213 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 147 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 81 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 17 30 100.0 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : CATTTATATTTGCTGATTGCCAAAGAGTAAGATACGTGTTTCAACACAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 36-1838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLN01000023.1 Campylobacter fetus subsp. testudinum strain 12S02847-1 contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 36 29 100.0 37 ............................. CTGAGTTATGTGACCTATGGGTTCTCCTTTTATGACT 102 29 100.0 37 ............................. CAGTATTTTAGAAAGGAATATTTTGGCAAAACTTACA 168 29 100.0 35 ............................. CTTGAAAGTCTTTGAAGTTTTAACGTGTGGTAAAG 232 29 100.0 37 ............................. CGTTTATACTGAGAGTGAATATATGCTATATCTACAT 298 29 96.6 37 ...............G............. CCTGTTATCGTATTCTTTTATGATTTTTTCATAGCCG 364 29 96.6 36 ...............G............. CTCGGACTTTTTAAATATTTTAAACAAAATGACTGA 429 29 100.0 36 ............................. CAAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 494 29 100.0 36 ............................. CATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 559 29 96.6 37 ...............G............. TAGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 625 29 96.6 37 ...............G............. TTCCGGGCTTCTGCCATAAAGCTTTTTAATAGCATCT 691 29 96.6 36 ...............G............. TCTTTTTTGATAGCAATAAAGAAGCTTATAAGCAAG 756 29 96.6 38 ...............G............. TTTTTAACCTTAAAGTGTCACGCTATTTTATGCAAAAA 823 29 100.0 37 ............................. CTCTCCATTGTCGATTTCTGGGGTCATGCTCTCTCCG 889 29 100.0 36 ............................. CAACCTCTCTTTAAGCACCATTCGTTTATTCCGAAC 954 29 100.0 36 ............................. CACTTTGAAAATAGTGCTATCGATGATTTAAATGGA 1019 29 100.0 36 ............................. CTATTCTATATGAAAACTTTATTAAAAATCCTAAAC 1084 29 100.0 37 ............................. CAGATTTAATACAACTTTTAGCAATATTATTATAAAA 1150 29 100.0 37 ............................. CCCTGTAAAGCCTTGTACAGTTCTAAAGTTGTTGGCA 1216 29 100.0 38 ............................. CAAAAAATCATTTAGCTCTTTATCCGCCGTCTGGCTTT 1283 29 100.0 37 ............................. CTAATTTTATTAGTAAAAATTGTAAAGACAAGTAAGA 1349 29 100.0 37 ............................. CCATTTAAAAATTTATTTTTAAAAGATGTTATCCTTA 1415 29 100.0 36 ............................. CTGTGGTTTTTCCCTATTCTCCAGCCGTTCGCTTCG 1480 29 100.0 37 ............................. CAAATGAAACATTCGCGAAGCTTGATAGCTTTGTAAA 1546 29 96.6 36 .........................T... TACGATTTTCCCTGTGCTTATTAGCACTATGTACTC 1611 29 100.0 37 ............................. CATCACATTTTTAGATATATCAGAACTAGCAGTAATG 1677 29 100.0 36 ............................. CTTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 1742 29 93.1 39 ......................A..A... TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 1810 29 79.3 0 ..........C....AGC....A..A... | ========== ====== ====== ====== ============================= ======================================= ================== 28 29 98.2 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : ACTTTTGCACTAGTTATAGCGCTAGATCCATCTAAG # Right flank : ATCATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAAATGAAAAATACAAGCCCATTAAGCAACGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACCGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //