Array 1 17213-22890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRBW010000002.1 Bifidobacterium adolescentis strain BIO5485 Bifidobacterium_adolescentis_BIO5485_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 17213 33 100.0 34 ................................. ATGAAGCCACCCCCTCGGCTTGGGGAGCGTCCAG 17280 33 100.0 36 ................................. CTCACGAGATCGCGCAACGTCTCGATGATTTGGAAG 17349 33 100.0 37 ................................. AAAAAGGAAAATCTGTATTGGGGCAGCACCGTACAGG 17419 33 100.0 35 ................................. GGTACAAACGGTTACATCCCTTAGTTATCCGATAG 17487 33 100.0 35 ................................. GCTTTCGTATTGGCGACATCGTTGGCTGTGCGGTG 17555 33 100.0 34 ................................. TACAAGGTGCATCTTGATGCGGCACCAACCGACG 17622 33 100.0 35 ................................. TCCATAAGTGACGTCAGCCGAATCATGCCAGTCCG 17690 33 100.0 33 ................................. CGAGACTCCATGGGACGATGGGCGGAGTACATG 17756 33 100.0 35 ................................. CCCATTGGTCGCGGAGCCATGTGTTGAGCCGTGGG 17824 33 100.0 34 ................................. TATGACACCTTGGAAGTCTCTCAGACGCTTTTGG 17891 33 100.0 36 ................................. CTACCATACGCGCACATGCAATTCGAACCAGTCAAG 17960 33 100.0 34 ................................. ACCTTGGACGAGGCGTTTAGCCTGACCGAAGAGG 18027 33 100.0 35 ................................. TCGAGGTTGGTCAGGTCGGTGAGCCGGTCGGCGAG 18095 33 100.0 34 ................................. CCGTACCTCGGCCGCCGTATACCAGCCGTCCGTG 18162 33 100.0 34 ................................. TCTCCCTTGATGGCGTTGATGAATGTGGCGTGTG 18229 33 100.0 35 ................................. TTGCAATGGCGACGACCACGTCGCGTACGAGGCCG 18297 33 100.0 34 ................................. ACCGTCATGAAGGTTGGAAAATTGGTGATACCAG 18364 33 100.0 34 ................................. CAGGTCACTCAGGTTGAGCGGGAGGCTGTAGTTG 18431 33 100.0 34 ................................. GAGTTCAACGATGCGCGACTGCTGCGCGGCGATG 18498 33 100.0 34 ................................. CGCGACGAGGTCGGCGTGATGGTCGGACGTGGCG 18565 33 100.0 34 ................................. AGCCTGATTACGAGCGTTACCCGCAGGAGCGTCG 18632 33 100.0 34 ................................. CTACTGCGCGTCATGTCAGTCAGCCTCCCCAAGA 18699 33 97.0 34 ..............A.................. TCCTTATCTTGGAACGTATTCCTGCTGGAAGTTG 18766 33 100.0 33 ................................. GAGATGAAGGATGGCGTTGAATCATGGCGGATG 18832 33 100.0 34 ................................. TACCATGTCCCGTCATTTTTACGCTGTTTATTGG 18899 33 100.0 32 ................................. GTCTCGCAAATGGCGCGATAGCCACGCGCCTG 18964 33 100.0 33 ................................. AATCCGGAATGCACCAGCAATTACTTCCAGGTG 19030 33 100.0 34 ................................. CTAACCGTTGGGGACAAGCCGTTTTTGAATGCGC 19097 33 100.0 34 ................................. TCGGCAATCGCAAATATTGCGGCGTAGAGGGAGA 19164 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 19232 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 19300 33 100.0 34 ................................. CGCCATTGAGCTTTCAGATTCACTTTCTGGCAGA 19367 33 100.0 34 ................................. ATCTCCCGCCGCCACCACAACCTCATGCGCCACC 19434 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 19501 33 100.0 34 ................................. TCTCGCAGCACCAGCATCTTGACTTTGCGTATTT 19568 33 100.0 34 ................................. CGTCTGTTGACGAAGTTTTTCTTGCGCTTGCATG 19635 33 97.0 34 ......T.......................... TTATACCGGTGCAGGTACGTCGTGCAGACATCCA 19702 33 100.0 34 ................................. GTCTTCACGCCCGAGGTGATCGCATCGTGGAAGG 19769 33 100.0 35 ................................. TCCGACACTCGCCTCTACAATTCCCGCGAGGAACG 19837 33 100.0 36 ................................. TTGCCGGCTCCGAGCAGCGCTTCGGCCACTTGGTTG 19906 33 100.0 36 ................................. GGCTTCGTCTACGACCTCTTCCCAGAAGAGGCGCAC 19975 33 100.0 34 ................................. AGGGTCAGCAGCGACCCGTTGCGCTCGGTGTGGC 20042 33 100.0 34 ................................. AATGGGGTTCTCTCCGATCCAGCCGTGCTCCAAA 20109 33 100.0 33 ................................. AACGTGTCCGGCATTCCGACGTTCGCGCAGCAG 20175 33 97.0 36 ............................A.... GCCAATGGAGCGCATGGCGGCCGGTGGTGTCTGCCG 20244 33 100.0 32 ................................. GTCGATGTACGAGGTGCGTTCTTCATATTCGA 20309 33 100.0 33 ................................. TTGCTGGCATCCGCCTCTTCCCAGTTCGTGCTA 20375 33 100.0 35 ................................. ATTCAGCGCGTTGAATACGTCAACGCTCATTGCAC 20443 33 100.0 34 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGGACA 20510 33 100.0 34 ................................. ATCAAGCCTGAGCCACGCCATAAGCATCAAGCGA 20577 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 20644 33 100.0 32 ................................. TACGACACTCTGGAAATCTCTCAGACACTCTT 20709 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 20775 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGCGCCTGTAT 20843 33 100.0 35 ................................. GTCAAGACCGCAGCGCAGGATACCGTCGTTGTCAA 20911 33 100.0 33 ................................. CAGAACGGAGCCATTCCCTGCCAGTCGGCATGC 20977 33 100.0 33 ................................. ATGCAGTTGGTGTCCGACATGGTCGGCGGCCTG 21043 33 100.0 34 ................................. CATGACGGTGCGGTTGGTGCCGTCCTGTGCCTGG 21110 33 100.0 34 ................................. ATCGAAGGCACCGAAGCGGGCCATAATACTCTGC 21177 33 100.0 35 ................................. GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 21245 33 100.0 37 ................................. TGCTTATTGCGTCATGTGCGGCTGCATTTCCCGAAAC 21315 33 100.0 33 ................................. AGCGCCGACCTGACCAAGGCGCAGCTGAACCCG 21381 33 100.0 34 ................................. CGGTGAAGTTCGCCACGGCATGATGATCGATGAC 21448 33 100.0 34 ................................. TCCTTTAATGGTGGGTGGGCAGTCTTAGTCGCGT 21515 33 100.0 33 ................................. GTGCTTCCCGGCCACACTCCCCCGGAACCCGAA 21581 33 100.0 34 ................................. CGCTTCGGACTGTTCCATCGTCAATGGACGCCAG 21648 33 97.0 34 ............G.................... ATCGTGAGTTTCCCGCGACTCCACGCTCTCAATG 21715 33 100.0 34 ................................. TCCAAGCCTGCCGCATATCCGAATGACGGTGGCC 21782 33 97.0 34 ...................A............. TCCGACCTGGCCGCGGACGATCAGGGAGGATACG 21849 33 100.0 34 ................................. TTGCGCCATAGCTGACGAAAAGCTGCTTCCACGC 21916 33 100.0 35 ................................. CACGGTCGAGTCGCCCACGTCCATCACGCCCAGGC 21984 33 100.0 34 ................................. GGTTTGACCGGCTACGCGATTCGCGTCACGGGCA 22051 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 22119 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 22186 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 22252 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 22319 33 100.0 35 ................................. AATAATAGTTTCGCCATTTGCCGACGCTCTCCGGT 22387 33 97.0 34 ...................T............. GGGTTGACGTACGTGGCGGTGCCCGTCACGGTAA 22454 33 97.0 33 ...A............................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 22520 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 22587 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 22655 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 22723 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 22791 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 22858 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ===================================== ================== 85 33 99.6 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACGG # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //