Array 1 176220-176674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPR01000005.1 Bifidobacterium longum strain TM05-14 TM05-14.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176220 28 100.0 33 ............................ TCAAACAGGCTCTCGGATACTGAGAGCTGAGAC 176281 28 100.0 33 ............................ TGGCGTCGTGTTATGGCTATGCACGTTTGTGCT 176342 28 100.0 33 ............................ CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 176403 28 92.9 33 ............CA.............. GAAAGCGCCATTCGAGGATCTCGATGTCCATAA 176464 28 89.3 33 .T..........CA.............. GAACGAAAGTCCTGAACATCTCGCAGATTTTGC 176525 28 85.7 33 .T......T...CA.............. GCGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 176586 28 89.3 33 .T..........CA.............. TTGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 176647 28 82.1 0 .T.....T..T.CA.............. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.4 33 ACCTACCCCGCAGGCGCGGGGATAAACC # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGTATGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTGCGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTACATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : CTGTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGGCCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGTCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACC # Alternate repeat : ATCTACCCCGCACACGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 180398-181339 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPR01000005.1 Bifidobacterium longum strain TM05-14 TM05-14.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180398 28 100.0 33 ............................ TTGTTTGCGGAAGCGACGGTGATGATCGCCATC 180459 28 100.0 33 ............................ GTGACCCCGAGGCGTTCCACTCGTACGGGTGGA 180520 28 100.0 33 ............................ CGCAGGCAATCAATGCCAGCGCCGGCCAGAACA 180581 28 100.0 33 ............................ GAGACTGCTCGGTTCAGCATCAAGATTCCTTCA 180642 28 100.0 33 ............................ CGGTCGTGACTGACTTTGGCGATACTTCAGATG 180703 28 100.0 33 ............................ TGAAGGAACTCCGCGGCGCGGTGTTTGACCTGA 180764 28 100.0 33 ............................ GCCAAGGCAGAGAAGGTGGTGGCCGCATGATGC 180825 28 100.0 33 ............................ GATATCGGGGGCGGGATTCGGGTCCTGCAGAGC 180886 28 100.0 33 ............................ GATACGAGTTGCTTAGCTAAGGAGGTTGCCCAT 180947 28 100.0 33 ............................ GCACGCAGAATCCGCGTGTCAGCACATCGTTGC 181008 28 100.0 33 ............................ GAAACGCAGAAACATGAAGCGCAATCAGCTTGG 181069 28 100.0 32 ............................ CTACCACCCAGATGTTTTCATAGCAATCTGTG 181129 28 100.0 33 ............................ GATGCGGCCCACGCTTACATCGCCGAGTTTGAC 181190 28 100.0 33 ............................ GTTCAAAACACGAACACCTCGGCATCATACAAA 181251 28 96.4 33 ............T............... TAAGACCCTGTACCAGTTCACGATTGATGCCGA 181312 28 96.4 0 .......T.................... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACCCTCCTCTCGGAGGAGCCCGATAACGAGGACACTTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGCCGATTATGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATTCGTACGCGACTCTGGCAACGAATCCTCTCGGAACTCGGCACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAGGACAATACGCCCTGAAAACAGGTACGCAATTTGCATAAACGGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTCTATGGATCGACGCTGATAGGCGCCTGCGCATACTTACCCCGCGCATGCGGGGATGGTTTATTATATGTTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGAAGTGGGGGGTAAAATGAATCATCCAGATCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACCAGCATGAGCATTACACGGAAGCCCTGAAACATTGGAAGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTGATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //