Array 1 779594-778970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001981.1 Dickeya chrysanthemi NCPPB 3533 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 779593 28 100.0 32 ............................ CGTCATACTTGATAGGATGACCGGTCGCGAGA 779533 28 100.0 32 ............................ GTGACGAGGTGGACAATCTAATCGCTGCAGCT 779473 28 100.0 32 ............................ AGCAATGCCAGGCTTTGACCGTGACGAGGTGG 779413 28 100.0 32 ............................ GCAGAACCCAACAGAAACTGAAGGAGTCCGAC 779353 28 100.0 33 ............................ CAGGGGTGAGTTGGCAACACCTGAGAGCCTGGC 779292 28 100.0 29 ............................ TAAACAAACCCCTTAACCGGGGTTTTTAT 779235 28 100.0 32 ............................ ACAGCTCCAGCGCGACCCGACGGCGGATGTGG 779175 28 100.0 32 ............................ TTCGCTCTGGGTAGCGCGATCAAGGCGGTCAA 779115 28 100.0 31 ............................ TGAGCAACGGCGTTTCGTTGACGAACTGCTC 779056 28 100.0 31 ............................ TGTCCGGCGCTCGCGGTATGAACGAGGATTT 778997 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGGAATAAGACGCAGGCTAATAATTGATTGGAAAACACGTAATGCACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCCAAAATACTTTTCTTATTTTTATACCCTTTTTTCCGCCGCTATTTTCGATACTTAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGACAATTGCAGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ATAGCGGCGGCACTGGGGCTTACACTGAGACAGTTCACTGCCGGATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGGCGTCGTTGCTGGTTTTAGCTGTTCACTGCCGGATAGGCAGCTTAGAAAGAATGCAACTGGCACGAGGCGCATGGGAAGAGGTTCACTGCCGGATAGGCAGCTTAGAAAACGAAGGCGCATGAGAAACTGCCCATCTGGTCGTTCACTGCCGGATAGGCAGCTTAGAAACGTTGGCGCCAGCGGCCTGGCACAGTTTATGCGTTCACTGCCGGATAGGCAGCTTAGAAAGGGATGCAACATGCCCGCTCCAGCGCGTCACCGTTCACTGCCGGATAGGCAGCTTAGAAAAGAAGCTGGCAAAAGTGCTGACCCCCACCCGGGTTCACTGCCGGATAGGCAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 788884-789270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001981.1 Dickeya chrysanthemi NCPPB 3533 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 788884 28 100.0 32 ............................ GCCTCAACATCACACTGGAGCCACGCAAGGCC 788944 28 100.0 32 ............................ ACGGTCATTGATGACAAGTCATAAGCTTTTTC 789004 28 100.0 32 ............................ TGTCAACAAATCTTTTTTGAGTAAATCAGAGC 789064 28 100.0 31 ............................ AAGGTACCCACACGAATTTTGGCATCAAGAA 789123 28 100.0 32 ............................ TTAGACGCCGCGCTGAAGCTACTGGAAGCGCT 789183 28 100.0 32 ............................ CGTCAGACGAAGGCGCTGGCCGATTTGGAGCA 789243 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAGTGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGATAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : ATTTGTTGGCAGGCTTTCTATCTGCTTATGCCTGTTCACTGCCGTGTAGGCAGCTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACGAGGCGGTTTTTTGTGCCTGTAACTCGTTCACTGCCGTGTAGGCAGCTTAGAAAACATTCCGGGAATATCAGAAGATGCCTGCCCGTTCACTGCCGTGTAGGCAGCTTAGAAAATGATGTTCCGACAGCTGTCCCGTCATGTCTAGTTCACTGCCGTGTAGGCAGCTTAGAAAATTGATGATGTGCAGATGATGCACATAGCAATGTTCACTGCCGTGTAGGCAGCTTAGAAATGCAGCGCATCGTTGAACGTTCTGTACAGCCCGTTCACTGCCGTGTAGGCAGCTTAGAAAGGTAGCCAATTTGCGCAGAGTATCGTCGCGATGTTCACTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 789461-790743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001981.1 Dickeya chrysanthemi NCPPB 3533 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 789461 28 100.0 31 ............................ ACATTCCGGGAATATCAGAAGATGCCTGCCC 789520 28 100.0 32 ............................ ATGATGTTCCGACAGCTGTCCCGTCATGTCTA 789580 28 100.0 32 ............................ ATTGATGATGTGCAGATGATGCACATAGCAAT 789640 28 100.0 32 ............................ TGCAGCGCATCGTTGAACGTTCTGTACAGCCC 789700 28 100.0 32 ............................ GGTAGCCAATTTGCGCAGAGTATCGTCGCGAT 789760 28 100.0 32 ............................ AGAGTGCGCCGCGTACTGGCTTGCTAGCGGTG 789820 28 100.0 32 ............................ TGTTTCGATTTTCGCAACGCTCCGGGCACGGT 789880 28 100.0 32 ............................ ATCATCGAGTTTCTTAATTGCCATAAGAACAC 789940 28 100.0 31 ............................ GAGTTAAGATTAATATCGTTTTAATAGCCTT 789999 28 100.0 32 ............................ AGCATAAATCCCATTTATATAGGATATGACAT 790059 28 100.0 32 ............................ AGGTGAATCATTTATTCGAAGCCAGGCTGAGA 790119 28 100.0 31 ............................ AATGCGTTCATCCGGCACCGCTGGTGCTGGC 790178 28 100.0 32 ............................ GGCTTTAAAAACGGCGTTCTCAGCGCACTTGT 790238 28 100.0 31 ............................ ATACGTGATCAGCTTAAACTCAATATCACCT 790297 28 96.4 31 ...........A................ AAGGCGTCCGGCACCTACCGGGCTTTACGCC 790356 28 100.0 32 ............................ GAGGAGACGCGGGAATCAGAATTCATACTCAA 790416 28 100.0 32 ............................ GTAATGACGGTCTTCCAGCGTCACTTTGCCAT 790476 28 100.0 32 ............................ TCAGATTGCCGAGTACACCCGATCGCCGTTAT 790536 28 96.4 32 ......A..................... ATCCGTAACAAGGACTGGGAAGCCACTGTCGA 790596 28 100.0 32 ............................ TGGAATGATGTTGTGACCCCCGAATAGCGACC 790656 28 96.4 32 ...........A................ GTCATCAGCCGAAAAAACGCTTTTGCGTAGGC 790716 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CAGCTTAGAAAACGGTCATTGATGACAAGTCATAAGCTTTTTCGTTCACTGCCGTGTAGGCAGCTTAGAAATGTCAACAAATCTTTTTTGAGTAAATCAGAGCGTTCACTGCCGTGTAGGCAGCTTAGAAAAAGGTACCCACACGAATTTTGGCATCAAGAAGTTCACTGCCGTGTAGGCAGCTTAGAAATTAGACGCCGCGCTGAAGCTACTGGAAGCGCTGTTCACTGCCGTGTAGGCAGCTTAGAAACGTCAGACGAAGGCGCTGGCCGATTTGGAGCAGTTCACTGCCGTGTAGGCAGCTTAGAAATTTGTTGGCAGGCTTTCTATCTGCTTATGCCTGTTCACTGCCGTGTAGGCAGCTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACGAGGCGGTTTTTTGTGCCTGTAACTC # Right flank : AGGACAACTGACAAGTGCTAGTTGACTGTTGGAGTTCACTGCCGCACAGGCAGAGGTTTATGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGAACCACCGCTCTCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCCTATTCCTGCACAGGAATAAAAAAATCCCCCGGCCGTTGCCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAAGCGGCGGCGACGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 797035-795924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001981.1 Dickeya chrysanthemi NCPPB 3533 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 797034 28 100.0 32 ............................ CAAGTCTCGCGGCTACGCGCCGGGTTGGGCAC 796974 28 100.0 32 ............................ GCATTGAGTACCTCGCAGACGCGATGCGCAAC 796914 28 100.0 32 ............................ TGAACTCAGAACAAATGTTTGCAATCTCATCC 796854 28 100.0 32 ............................ GCTAACCACCACCGCCAAGCGCGGGGCAATTA 796794 28 100.0 32 ............................ TGCGTGGCATTGCCGTCTTTCAGATATTCTGC 796734 28 100.0 32 ............................ GCGAACCGGCAGATGTTGGCGGCTATGGCTAC 796674 28 100.0 32 ............................ ATGCGTGGCTATTGTCTGCGCGCTCTCGGCCA 796614 28 100.0 32 ............................ CTTGGGACAACCCCAACCTAGCCCGTTCTGAT 796554 28 100.0 32 ............................ GTTGGCATCGGTTCAGTGACCGGCTGGCCGTC 796494 28 100.0 32 ............................ GGCCCCATTTGACCAGAGATAAACGCCCGTGC 796434 28 100.0 32 ............................ TGCATTGCCCGTGAGTAGCGTTCGCGCCTGTC 796374 28 100.0 32 ............................ TGACAACAAATGGGGGCTGATGCAAGAGATAT 796314 28 100.0 32 ............................ ACTGACCCACACCCAGTTACCAATAACCTCGT 796254 28 100.0 32 ............................ GTTTCAAATCGAAACGGAGCTTGACCACAGGC 796194 28 100.0 33 ............................ TGGCCTATATTGGCTGCGCCGGGATGGACAGGG 796133 28 100.0 32 ............................ ACTATGACGCTGATAGCAAATGCCTTAAAAGC 796073 28 100.0 32 ............................ CTGCTGCTGGGCCTGCCGTGTGTAGTCGGCCT 796013 28 100.0 32 ............................ TGTGGACAACGGATGATGAACGCCCTTGCAGC 795953 28 75.0 0 ..T........C.C.........G.TGG | GG [795928] ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.7 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCTATCCGCACGCAGCGAGGTATACGGCTTGTAATCGCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTGCACGCCTGTCTGGCAAAAGCGCCACTGTAGCACGCTGTTTCCGCCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGGTTCAACAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : GGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCAAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGATACGCGATTGCCTATCCCGCACGAAACCGCTCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTACCAACAGCCCGAAAACGCTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCACCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 1019249-1019099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001981.1 Dickeya chrysanthemi NCPPB 3533 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1019248 28 100.0 33 ............................ CATATACTCAGCGCTGTTAGCGTTTCACATGCG 1019187 28 100.0 33 ............................ TCTTACGGCCTATCTCCGCATCGAAGTTTTCAG 1019126 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAGCCGCTGTGTATTGATCTGGCATTTTCTCTCTCACGAGAAATGGCTGGTCATTATGATAAATACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTACCACCTGCGGTTCGTGGGCGTATGAAACTTTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCAGGTGTGAAAGACTCCGTGGCACAAACCGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCTGGTTACGAAATTCGTTACAAAGGCGAGATAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATCGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : CGAAACGCCGCTGCTCAGGAGTCAGCCTTTCCTGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTCCCCACGCACGTGGGGGTGTTTCTATCAGCGACTGGAACCCAGCGCCCCCGAATGGGTCTTCCCCACGCACGTGGGGGTGTTTCCCAGGCACCCATGCTCTGGACGTCATCAACGCTGTCTTCCCCACGCACGTGGGGGTGTTTCTTGTCTACCGCACGATTATCAAAACTGACCCGGGTCTTCCCCACGTACGTGGGGGTGCTTGTTTGCAACGGGGCCTGACGCCGCCGTCTCCCCCACTCTATTTGGGAGTACCACCAACTCATTTCATTCTGCCACCGCACTACGGTGGCATTTTTCGGGTATAGCTTGGCTTTAATCGCCGTTAATGTCTTTTCCCTGTCGTTGCGGCGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //