Array 1 1125-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902479.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_203.204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 1124 28 100.0 35 ............................ ATCGATGCGGTTCGAGAAGAAAATGAAATTGCAAT 1061 28 100.0 36 ............................ CGCCCCGCTGCTGCTGGGGGTGGGCGATCAGGGCAC 997 28 100.0 36 ............................ TCACCACCGAGCGCTGGGCCCTGGCCCGCTTGGCGC 933 28 100.0 43 ............................ GACGGTGGCCTTCCTGGATCCTGGACCTCAACACCAAGTGGAC 862 28 100.0 36 ............................ CTTGTCCGATCTGCTGGCGCTGGATGAGCGGGCGCT 798 28 100.0 36 ............................ TCTCGGTGTCGAAGGTCACCACGTTCGGGAAGAACA 734 28 100.0 36 ............................ CAGCGGCGGTCTGTTTTGCGGGCCGGGCTGGAACCC 670 28 100.0 35 ............................ AACAGCGCCAACGCTGTCGCCGCCACGCCGCTCAG 607 28 100.0 36 ............................ TCGCTGGCGCCACGCGGACGGGGTGGAGTATGCCGC 543 28 100.0 37 ............................ CACCACGCATACAGGCGACAGCGACGCCGATCGACTT 478 28 100.0 36 ............................ GGGGTCCGGCCGGCTGTTGGTGGTCTCGATAGGGGA 414 28 100.0 36 ............................ TTTGGTGCCCAGTCCTCTGGCGATGGCGTCCAGGGC 350 28 100.0 36 ............................ CGATCCGACCCCGACAGCACATAGCCCTCTGGCCCT 286 28 100.0 36 ............................ GAGCGGCAGGAGGGCGCGGCCGTGCGTGGGGGTGAG 222 28 100.0 36 ............................ TTGGCGCTCGATGTCGGCGGCGGCGTAGGCGGCTTT 158 28 100.0 37 ............................ TCGCGGCGAAGGGCCGGGCGAGGGCGGGGGCGATAGT 93 28 100.0 37 ............................ GATAGAAAGCAAATACAGGGACGCTATGAACGACATT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================== ================== 18 28 100.0 37 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : AACCCTCTGGATTGGACTCCAGCGCGCTGCCGACTTCGTGCTGGCGATGGCGGCCCAGCGCGGTGTCGGGGAGGGGAGATATGGGTAATAGTCAG # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 1128-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902480.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_204.205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1127 28 100.0 36 ............................ CATATCAGCAAGACCGAGACGGGAATGAAAGTAAGT 1063 28 100.0 36 ............................ ACCTACCTGTTTGATATCGTCGAATCCAGCGGTAGG 999 28 100.0 37 ............................ GGTATCTGGCGCGGCCGGTGGTGTATGCCCCGTCGAC 934 28 100.0 36 ............................ CAACAACAGCGGCGGCTCGATCGGGCTGACCATCAC 870 28 100.0 36 ............................ CGACAGCGTATCCGCCGCGCTTGAATACAGATGCGC 806 28 100.0 37 ............................ GCGCGTCGTCGAGGTCCTGCGAGAGGGTCTCGTTGAT 741 28 96.4 36 .......T.................... GGGGCAAGTCGACCAGGTCCGGCCGGGCGGTCCGCT 677 28 100.0 36 ............................ CAGCACCCGATAGGGATTGCCGCTATCGACTTCCCA 613 28 100.0 36 ............................ CACGGCGATCGAGCATCCGGAGCGGGTGGCGGCGCT 549 28 96.4 36 .....T...................... TGGGCGGAATGCCTTCCTTTTCGGCGTAATAGACCT 485 28 100.0 37 ............................ CGCTCGATCGCTACACCGATGCCGAGTTGGATGCCGC 420 28 100.0 36 ............................ CCGCCCAGGTTGCCGTGCGCCTCCATCGACATCAGT 356 28 96.4 35 .........A.................. TTTCCTGCTACGTCGGAGAAGACCCAGCACCGGGT 293 28 100.0 35 ............................ CAGGGTCGCGGCGCGGTAGTGGCGACGCGGGTTGA 230 28 100.0 35 ............................ GCGGGGATTGCGGTGGAGTCGAAATACAAAACCGC 167 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 16 28 99.3 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : TTGT # Right flank : CAAGATCAAGAAAGACGCACCGCATGACTTCGAGACCCTCATAACCTGACTATTACCCACATCTTTGCTGGCCGGCTGCGGCTGCCAGGGCTGGACACAGCACGGCGGAAGTGGTGAAATCCGCTCCCATCACGACCGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 1180-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902482.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_206.207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1179 28 100.0 35 ............................ CGGCTGCGCGCATCGGCCAGCCCCGCGGTGTCCGC 1116 28 100.0 35 ............................ TTCCACAGCCGTTCCAGGCGGTAGTCGTCGAGGAA 1053 28 100.0 36 ............................ GAGGAGGCTTGGCGTGTCACGCTCGAAGCGGTCCGG 989 28 100.0 34 ............................ GCGCCGGGCTGGCCGCGCTGCCGTCGCTGGCGGC 927 28 100.0 36 ............................ CGCTTCGTCCAGCCGGTTGGCGAGTTGCGCGGCGCT 863 28 100.0 35 ............................ CTGGCGCGGGCGGCGGAGTATGAGCGGCTGGCCCA 800 28 100.0 37 ............................ GCACCAGCGGACCAGTCACCACCACCTCACGATCCAG 735 28 100.0 36 ............................ GCCACAGTCCAGTTTCAGCGTGTCGCCGTCGGTGAA 671 28 100.0 36 ............................ TCGTCGGCCCGGCCGGTGGCGTGCTGGTGTGCCAGA 607 28 100.0 36 ............................ CGATTGGCTCACCCCGCCGACGCGGGCCACATTGCC 543 28 100.0 36 ............................ CGGCAGCGGATTGCCGGTTGCCCTTGCCTTTTTCGG 479 28 100.0 36 ............................ CCTTCGTGACCTGGCCGAAGATGCGGCCCTGTGCGA 415 28 100.0 36 ............................ GCCGGGGATCGAGCCACAGGATACGGGGCGGCAGGC 351 28 100.0 36 ............................ GGGGTTGTCGGGGTCTTATACGATCCAGCGGGGCAC 287 28 100.0 35 ............................ GCCGATCAGCGGCCGGCGCTGGCCTTTTGCGCGAC 224 28 100.0 35 ............................ CTGGTCGGCACGGCTTACAAGGTGGGGTGGGCGGG 161 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 17 28 100.0 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : | # Right flank : CGCGTTCCAGAGGTCGGCCTTGCGCGCCGCAAAGAACTCATGGCTCATGAGGCCAACTGTGTGACGCCACACAGCATTCGGAGAAATTCTATGCAGCATATTTTGATGTTGTGAGCCCATTCATGAATGGCGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 74558-74737 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902493.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_25.26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 74558 37 97.3 35 .................C................... TGGCATGTTGCCACCGTGGGTGCGCTGGCCGGCAA 74630 37 100.0 34 ..................................... CAAGGTGGTGTCGTGAACAACGCCATCCTCGACA 74701 37 89.2 0 ..............G.T.........T.....T.... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 95.5 35 GCATCGCCCGGCCAATCGGCCGGGCGCGGATTGAAAC # Left flank : CCAGCGGCTGCCATACAACAAGCGTTCGACCAGACGTTCCACGGTAAGCGACTCCAGAGGTTTCGATGCGCGTCCCGGCCGGCAGCCGGGCGCGATCGGCGGGGCAGGCAGGATAGCCGCTAGTTTCCCCGGTGCCGTGGGGGGCGTCAATCCGCCTCGAAGCACACTCGGCGGGCGCTGGAGCCGAACCCGTCACTTCAGCACAGTTACGCCCTAATCGTGTATTTGCGTTTCTACCGCCTAACCGAGCCACACGAACTCCGCGTCAAGCAATACGGAACCTTTCGCACCTTGGACTTCGATGGTCCGCTCGTCGTTTTACGCGCGAACCCCAAGTAACAGTGAAAACCCCGGTAGTTTCGCGCGCTCTCGAAGTCTTTGATCTTTAAAAGTTTCGATACCCTTGGCCTTCTTATGCCTCAACCAAGACTTGCGCCCTACGCTCGATTCGCGCAAGCTCGCCAAACTTCGTCGTGGAATCCGCAGGTTACGCGCGCGAA # Right flank : CTTGCTGAGTTTCCCGGCGTCGAAGTGCAAATCCTGTGCGTATGAAGAGGCAGACATGAACGACTGGCGAGACTGCATCGTCGCCAATTCCGATACCCTATTCGGCAAGCCGCGGATTAAGGGCACACGCATCGGCGTGGGATTTGTGCTGGACCTATTGGCCTCCGGCTGGAGCGAGGTGCAGATTCTGGGCAGCTATCCACACCTAACACAGCAGGACTTGCAAGCGGTCTTCGCCTTTGTGCGCGACTGCATGCGGAATGAGACCTTCATCATGCGGGCGGCAGCGGAGTCCGGTCAGGTGCCGACGTAAATCGGACTGGCTGGCCGACAAGAACTTCCCCGGACCGGTTATCCGGGGATTGTCCGCGGCGGGCAACGATATCGTATCAGTGGGCTAGTCCGCTCCGGGCATCAACGACCTCGCCGTGCTCGACTTTGCCTGCCGTACCGGTCGTCGGCTGCTGACCTTCGATGTCGATTTCGGTGAGTTGGTATTT # Questionable array : NO Score: 6.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCCAATCGGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-21.20,-21.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55136-56913 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902375.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_11.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 55136 36 100.0 37 .................................... AGCCCATGAACCGGCCTTTGTGAATTTCATCGGAGAG 55209 36 100.0 37 .................................... TGCCGACCACGTGATTGATCTGGCGCAGTATCGGGTG 55282 36 100.0 37 .................................... CCCAGCTCGCGCAGCAGCATCTGGCGCTCCGGGCCGG 55355 36 100.0 36 .................................... CGCTCCAGGTCGCATCATCCAGCCCCAGGTCTTTTT 55427 36 100.0 35 .................................... AGCTCGCCCAGCAGCGACACGCGCTCGACATCGTC 55498 36 100.0 37 .................................... ATGGAGTGCCGTATTGGCGGTGGGTGGTCAGGCAGAG 55571 36 100.0 36 .................................... CAGCCGCGCCAGCAGATCCCCGGCGCGGATCAGCTC 55643 36 100.0 36 .................................... GGCTGGCTTGTCGTCGGCCAGTTCGAGTTCGAGGAC 55715 36 100.0 39 .................................... GGGTCAGTACCCCCGGCCTGGCCCGGCGCCACAAGACAC 55790 36 100.0 37 .................................... CAGACGCGAGGACCGGCGATGTGCCCCAGGGCGAGAC 55863 36 100.0 38 .................................... ATCGGTGATCCGCGCGGCAAGGTCAGCGGCAGCAGCGG 55937 36 100.0 37 .................................... GGTCCGGCGCCCTATTTCGAGACCGTCAACACCATGG 56010 36 100.0 36 .................................... GAGGCCATGGCGCGGGCCGGACTGGCGAACCAGCAG 56082 36 100.0 37 .................................... ATCCCCTAGCCGCGCCGACCCCAAATGCAGGGCCGCC 56155 36 100.0 36 .................................... TCATCAGTCGCCCCGCCGCCCGGCGGCGGATAGGAC 56227 36 100.0 35 .................................... AGCTCGCCGGTCTCCGGGTCCACCCGCCCGGCCTG 56298 36 100.0 37 .................................... AACCAGAACAACAGAACAGAGCGCACAGTGCCAGAAG 56371 36 100.0 35 .................................... GCGCCAAGCCCAAGCCTTTCAGGCATCTGTCGGCG 56442 36 100.0 37 .................................... GATATCGTTTTCAATTTTTTCTCGCCGCGACTGCTTT 56515 36 100.0 35 .................................... CATGGCCCCCAAGCGCCGATGTGACCAGCAGCTTC 56586 36 100.0 36 .................................... GTTCCTGAGAATGCCTTTTCCCAACCCGCGGGCGCG 56658 36 100.0 36 .................................... GCCTTTCTGGGCGCTGTCTTTGATGCCGCCGGCTAC 56730 36 100.0 37 .................................... GGCTTCGGCGGTCGCGGCGGTGACGGCGGCTTGCGAG 56803 36 100.0 39 .................................... AGCGCTGCACCCTGGGAGTCAGGGCACACTGGTCAAGAG 56878 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 25 36 100.0 37 CTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Left flank : ACCTGAATCGACACTGCGAGACGCCCGTCGCCCCGCGAACACCGGGCCTTCGCTCATCGTCAACGTCGAGCGGACCCGCTTCTTCAGGCTAAACCGCGCCCAGCGCGGTATGCGATGTTCTTGGATTGGCTCGGCCCCGGCAGACTCGACAATTGATGGAGTTGGCGCTTTTAAAGTTTTGAAGAGCATCAATTTTAAGCCGCGTCTCCAGCGAGGTTGGTTAAATCCCCAAGGCCGAACACACAATGAAAATTACGTATTTCGCGCCGGACGCGGTTTAGGACACGCAACGAAACACCAGGCTCGCCGGGAGGCCGCGAGCGCTCCAATGGTGCGTCAAACCCCGTGAGCACTCGCAGAAATTTGCTCTTTAAAAATCAGGAAAATGATTTACACTTCTCTTGTCTTGAGTCAAGTCGTGGCGCGCAAGTGCTTTCCGATCAGGGAGCGCTCGCAAAGCGCCCCGCAACCCGCGCCCCTGGCGGGCTCCAGAGCGGGCT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 58041-58949 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902375.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_11.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 58041 36 97.2 36 ...........A........................ ACTAATTAGGAAGGAACGCGAGGACGCGGGACTGAC 58113 36 97.2 36 ...........A........................ ACTAATTACTCACTATAACAAGCTGGATTCCACAAG 58185 36 100.0 38 .................................... CGGTTGAAGGCGCCGGAGAACGCCTGAGCGGTAGGGGC 58259 36 100.0 37 .................................... AGCGTGCCGGCCGTGTCATCCATCGTGGTGATCCGCA 58332 36 100.0 36 .................................... ATCTTGCGGAAGCACGGATTGCCCCAGTTGACCCGG 58404 36 100.0 38 .................................... CATTACTAGCTGAGTTTGGCCCGAACCGGATATATGTA 58478 36 97.2 38 ...................................T GAGGGCGTCGGCGGTGGTGGTGATGACCCCGGAGCCGT 58552 36 100.0 36 .................................... GAAATTCGGCCAGCGCCCCGCGGGTTCGACGCCCCC 58624 36 100.0 37 .................................... GCGGTATTGCTCGGTGAGGATCGCCAGGGCCGCGCAG 58697 36 100.0 36 .................................... GTCCTGCACGGCCTTAAACTCGTCCAATTGCTGCCG 58769 36 100.0 36 .................................... GCCGGCAACGCCGACCGCCACGGCCCGGTTGACCAG 58841 36 97.2 37 .................C.................. TTGGCTTCCCAGAATGGAAATCTAGCCTTGCGCCCAC 58914 36 94.4 0 ..........A................G........ | ========== ====== ====== ====== ==================================== ====================================== ================== 13 36 98.7 37 CTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCGGGACTGAC # Right flank : CAGAGAAAGCCCGAGAAGGCTCAATATGGATTCCGGACTGTCCACGAGTTGTTATGACACGAGCAGTGCCAACAGCGGAGTCAGCAGCCCTTTTCCACGGCTGCGTGTATTGTGAACAAACTGAAAGAAGCCCAAGTAGAGCGGTAATTTCTCTTGCGAGATCCCGCGATGGGGTCGCAGCCAGGAACGCAGCAACGACCAGAAGCCTTCCATGGTGTTGACTTGGATCTCATGAAAGCCGTCACCGTCCTCGTCACGCGCAGACTCCCCGCGGCTGTGGCAGACGGTTTTGTGTTCATAACCCCACTCTGTCAGCCGACAGTAAATGACGTACTCATCTGTATGCACACGGGTTCCAGGGGCGATAAAGGTCTCGATCAGGGGCCGGATCGTTTTCTGCTGGACATTCTCCAGCATGCGGATGACCACCGCTCCACCGCGCTGAATCATTCCGAGAATCGGCGGTTTTTCCGTCGCGAGGGTACCCCGTCCACGTGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 80183-78364 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902495.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_27.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 80182 28 100.0 36 ............................ GTATCAAGACAGTGCAGGCACGACTCCCGTTACGGC 80118 28 100.0 37 ............................ CGAACTCGATTGACTTCACTGCTACGGATGAGATGAC 80053 28 100.0 36 ............................ CCCTCAGCGCGTACCTCATGTGGAGCGTCGTGCAAG 79989 28 100.0 37 ............................ CCGAATCCTTATCGGCAGTAGCGCGCGCGATCTCAGC 79924 28 100.0 36 ............................ AACTCATGACACTACCGCCCAATAAACGCCATCTTC 79860 28 100.0 36 ............................ GCGGCGGTTGGTGGCGCTGTTGTATGCCGGGATCGT 79796 28 100.0 36 ............................ GGGCAGGCGCTCGGTGACGGGGGTCCAGGGGGTGGG 79732 28 100.0 35 ............................ CTGGTCGCGCCGCCGCCGGGCGGAGGATAGGCCAG 79669 28 100.0 36 ............................ CGGTCTGCATCAGCCAGGCCGGGACCCAGTAGTACC 79605 28 100.0 38 ............................ ACGCGCCTGGTGGCCGCACTGCCGTTCCGCGACCGCGT 79539 28 100.0 36 ............................ GGCGCCGCCGTTGCTGTAGGCGCGGCGAATGGCCAG 79475 28 100.0 36 ............................ TCGAGCGTGACGATCGCCCCCTGGGATGCCTACATC 79411 28 100.0 36 ............................ CACCACGCCCCCGCGCACCCACACCGCCCCGCCGAT 79347 28 100.0 34 ............................ CCCGCAGTTGCACATCATCGACATAAACCAACAA 79285 28 100.0 37 ............................ CTTTTGCTCTATTGCATCCGCCTGTATCTCCCGATAA 79220 28 100.0 36 ............................ TTGCATCCTCAGAATGTCATCACGATGCCGGGCGCT 79156 28 100.0 36 ............................ CGCCGGACGCGACGGCCGAGGCGGACTATCTGCCGC 79092 28 100.0 36 ............................ TTCTCCGCGTTTACCACGGGCGGAACCGCCACGCGC 79028 28 100.0 36 ............................ TGGCCTGGCCCGGAAACATCTGCGTCAACAGGTCGC 78964 28 100.0 36 ............................ GGATGATCCGGAGTTCGCGGAAATCTGCGTGAACCC 78900 28 100.0 36 ............................ CTTCTGCCGCATCTTATCCACGGCCTCCGCGACAAA 78836 28 100.0 35 ............................ CCGGTTGCGGTTGCTCCGGCGCCGAAAACAGCGCC 78773 28 100.0 36 ............................ TGCGCAGGAACCGCAGGCCCTGAACGACCTGCTCCA 78709 28 100.0 35 ............................ GCGGGCTGCGCTTCAACGTCGGGCAAATGGGCGGC 78646 28 100.0 35 ............................ TTGGGGCGCGCGGGGCTGCCGTCTGCCCATGTCAG 78583 28 100.0 36 ............................ CCACACGTAGGACACTAGGGCGGCGGGGCGCCAACG 78519 28 100.0 35 ............................ TTCTCCCAACCAGCGGGGGCGCGCTTGACGCTGAT 78456 28 100.0 37 ............................ TCCCCGATGCCCCCGTGTGGGAACTGGCGAGCAGCAA 78391 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 29 28 100.0 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : ATAAATATGTCCGTTAGCACATTTGTAGTATAGAACTGGCGCGCGATCTCTTCTGTGAATTTTCGAATCTTCAACTGGGCATTGACAAACAGGGCACCCTAGACCAGTCGGATGAAGTATATTAACCAAGAAATCATAGCATTTCTGTTCGTCCATTAACTCGATGACGGAAAAAATGAGCATATCAGTCCAAAAAGATAATTATGTGCTGTGCGGTATTTCATTATCGTCTATCATTCTAAATTAATAAAGGCTCACACACTTGGCCTCATGAGTCGA # Right flank : CCTCGTAGTGTAGAGCAAATGCCCATCTCCGCCCTTGCTCCGGTGGTGCTTGACGCCCCTCCGGACCAGCAAAGCCATCGTCTGAGCTGGCTGCCGGTGACTTCAGCGAAGGTCGACGTAAGTCGTCAAAGGACAGAAAAGTCTGTCTGATGGCGTGTGTCTGGCTGCCTTGCAACCTCGCCCTTGCCCGAGTCTGACTTGACCAAGTGAGTGATCTGGACATTCTTGCGGTTGGCCGCCGTGATTTCAGTGAGGCGGTCGCCGGGGATCATGACCTCGCTGAGTTCGCGGCGCAAGCGGATGGCGACAGCCTCAGTGATGTCTCCCGTGAACACGGAATACTGCTCATGGTTGAGATAGCGACGTAAGATCTTGCGGAAGATGAGGGTCCGTTTGGCTTCCACGTCGTAAGTCATCAGCATGAACATGATCAGGCGCGACGCTTGAAGGATTCGTACTCGGCCACCTCCATGACGTGGCGCTCAAGCCCAAGCGCCTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 39712-39528 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902501.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_32.33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 39711 32 100.0 40 ................................ CGGTGAGGACCCTGGTCTCCCCGGCAGCCCTCGACCCGGC 39639 32 100.0 48 ................................ CAAAAATCCGCAATCAGTGACTTAGCGTCATGTCTTCAGGCGTCACGT 39559 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================ ================== 3 32 100.0 44 GACTGACAGTCCAAACTGTTTGGACAACGCCC # Left flank : AGCCGCCCAGGCATGGCATGACTTGAAGCATTTGCCGCTAAATCGAGGGGCAAAAAATGTGGTGCTGGTGGTGCATCACAGCGAGCGGCTTGATGCTGTGGTGTTGGCCCGCATGAAAGCGGTTCGGGAAACTTGGGATTGGACTCCGGTCGTGGCGACCGTGGTGCTGGAAGGTGATCTCGCCGTGCTGGAGCCTCGCCTTGGGGGCATCGACGAGTTGCGGGGGCGTTACGACATCGTTCCAGAATTTGTCTTGCTGGACTAGCCGCCGTAAAGGGTACTCTCTCAGAGAGGGCCGTAGGTTGGGGTGACGAAGGAACCCCAACGACCAACGCTCAGCGGCCTCGCCCAGGGCCAAGGGGCGAATGAATTCGCCCCGACAGGCTTCCATGGGAAAAAGGACGGTCCGCCAACCATTGTGTCGGCACCGACCAAATGGTCCGCCGCTCCGCCAAAAATCCGCAATCAGTGACTTAGCGTCACGTCTTCAGGCGTCACGT # Right flank : GGCACCGCGTGCCACTAAGGACACTCCGCACGCGGGTGCCTGCCATGCTCGCGGCCATGGACCCGATACCCACCTTGTCTGAACTGGTGCCTCTGCTGTCTGAACGGCTGGGGTTGGCGGCGATCTTCGCCCTGGCGATCTATGCCGGGGTGGTGGTGGCGCGGGCGTATATCGCGTCGATGCGGGATATCGAACTGGCCCGCGTGGCGGTGCAGCAGACGCTGGCGGCGGCGATCCAGACGCAGGCCGGGGCGGTGGCTGAGCACGCGGCGGCGGATCGGGAGATGCGCCAAGCGGTGTCGGGGCTGGAGATTGTGGTCACGCGGGTGTCGCAGATGATCGAGAGCCAACGGGACAGTCAGCGGGGGAGTCATGGTTGAGCAGTATTTGATGGGGCGGCAGATCGCCGAGCGCGGCTGGATCATCGTGATCCTGGCCGACTTGGTGGTCGGGGCGGCCGATGCCGGGACGGTGCGCAATGCGATGCGCCAGTTGGGCGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTGACAGTCCAAACTGTTTGGACAACGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 5051-4412 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902397.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5050 29 100.0 32 ............................. GTTTGTCGGCTCAGCAGTGGGTGAGGGAGAAA 4989 29 100.0 32 ............................. GTGCCCAGGTGGGCCGCGTGCTGCTGCACCGC 4928 29 100.0 32 ............................. CCCGGCGGGACAGCATGAGTCAGCGGGTGAAG 4867 29 100.0 32 ............................. CTGATATTGAGGAAACGTGATGCCTGAGAAAG 4806 29 100.0 32 ............................. ACCGCATCTGCGACTCAGAATGGAGACAAATC 4745 29 89.7 32 ......AAG.................... CTCACCGCCGCCGCCGCCGTTCCGCAAGAAAC 4684 29 96.6 32 ......A...................... GCCAGCGGCCCCGGGTGGCAGACCAGGGTGAA 4623 29 100.0 32 ............................. TTGTTTTATTCAGGAAGTGCAGGAACTTATTA 4562 29 100.0 32 ............................. TCGCTCGACAGGCTGCTCGTGCCCCGCTGGAG 4501 29 96.6 32 .............T............... ACATCACCGAGCGGTTGACGTTGTTCCAGGGT 4440 29 82.8 0 ....G..TT..........A....C.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGTGTTCCCCGCGCCCGCGGGGATGAACCGTACAACCATGATTGCTGTCTCCCGGATCGCCC # Right flank : CAAACCCACTCGAAAAAAGCGCCATCGCCCGGTGTTCCTCGGGCCCGCGATCGTCATGAGGGCCGCCAATCGCCCGCACAAGCACCTTACGCTAGGCCGCCTTTAGCAGTGCTTCCGATCGGACTTTGATCCGGCCAAGGCTGGTAAAGCTAAGCACTGCTCGTAGTCGTGATCGACCGGCCAAGGCCGCCCGTGGTCTCTGTGGGCTGCGCGGAGCGGGCTCTCATGTTTGCAGCAGTCGCAGGTCTTGTCAGCCACAACGGTTAGCACCTCCTGGTCGTCGTGCTCAGCCGTCTGCGGGGAGCGCTCCGACTACCCAGGCGGCGCATTGCGCATGGCGACCGCGGTTTGCCGAGTCGCCGCATCAATCCTCCCAGTCCATCAGCCCCCGCGCCCGGATCAGCGCGGGGTCGAGGTCTCCCCACTTGGCCTGGATCTCGGCGAAAAGGACCTCGGCTTGCTCCCGCAACCCCTGGTCGATGGCGTCATGGAGCGCGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7883-6937 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902397.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7882 29 100.0 32 ............................. TGACAGGCTCATCAGCAACACACGTATTGGTC 7821 29 96.6 32 ............................C AAAATCGAAAGGATGCAACCGTTCCCCCTTTC 7760 29 100.0 32 ............................. CCAACGCACCAAAAAAACGCCGAATGATTGGA 7699 29 100.0 32 ............................. CTCACCCCGCCCTGCACGCCAGCCGCATGATG 7638 29 100.0 32 ............................. GCGCTTGTGCTTGGTGCGAATCAGATACTAAA 7577 29 100.0 32 ............................. CTGATCAGGCCGCCCTCGATGCAGGACCAGGC 7516 29 100.0 32 ............................. CCGCCGGTGAGAGCGACCGGCTTGACGGTGGC 7455 29 100.0 32 ............................. GTGTCCGCGGTTCATCGCCTAGCCCTCTTTGT 7394 29 100.0 33 ............................. CGCTGCAACACCCACTTGACCAGCAGGCGGTCG 7332 29 96.6 32 ..........................T.. GTGCTGACCACGGAGTGCGATTTCCCCGTGAT 7271 29 100.0 33 ............................. CACGCTTGGTGGCAAGCATCCAGCACCGCGACG 7209 29 100.0 32 ............................. CCCGCCCCGCCGATCCGTTGCCCCGACACCCT 7148 29 100.0 32 ............................. CAACACGACGTAATAATGAATTGTGTCATGAA 7087 29 100.0 32 ............................. ACGAGGGCTTGCTTGCGGCGGTCTTCGAGGCG 7026 29 100.0 32 ............................. ACTTCCAACATGCCGGTGCTGCGCATGTTGGC 6965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCCGGGTTGATCAAGTACGCCGCTGATCGGTTGTATTCCCCGCGCCCGCGGGGATGAACCGGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 9002-8484 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902397.1 Lamprocystis purpurea DSM 4197 A39ODRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9001 29 100.0 33 ............................. CATAGTTGCCAACCGAGAGAACGCTGGGGTCGT 8939 29 100.0 32 ............................. CTGCGGACACTTCAAGCCCGATGATATCGGCG 8878 29 100.0 32 ............................. GAACAGTGCGCGGTCTTCCGCAGCGTGAATGT 8817 29 100.0 32 ............................. GCTTCGATATGCCGAGCCTGTCGTGCTGCATC 8756 29 96.6 32 ............................A CGCGCCACACCGCGCAGTGATCCAAGAATATC 8695 29 100.0 32 ............................. TTCGGCTCTACCGCGTGGTGTTCGAGGACAGC 8634 29 100.0 32 ............................. CATCCGCCGAATGCTCCTCACCGACTACGACC 8573 29 100.0 32 ............................. GCGTTGTGTTCTCTGATGTGTTAATTATAGCA 8512 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : AAAATCATCCCCATGATCGAAGAGGTCCTGGCGGCCGGCGGTCTGCAGCCCCCGGAGCAACCCGAAGAATCCGTCGGACCGGCGATTCCTGAAGGCGAGCGATTGGGCGATGTTGGTCATCGTCACTGAGAACGTACCGCCGCGGCTGCGCGGACGCCTGGCGGTCTGGCTGCTGGAGATCCGCGCGGGTGTCTATGTCGGCACCCCGTCCAAGCGGTTGCGGGAGTTCATCTGGGACCAGGTTACGGAAGGGGTAGAGGAAGGCAATGCGGTGATGGCCTGGAACACCAACACGGAATCGGGTTACGATTTCCTTACCGTCGGCAAGAACCGGCGGATACCAGTTGATTTCGACGGCCTGCGTTTGGTGAGCTTTCTGCCCCCGGATGAACCCAAGAAGCTCTTTAACAACTGAAAACGAACCCCTTTGAAATGCGGACACATTCGGTAGATTTTTTCTTGGCGAAATTCTCTAGCGAAATCCGCGAAGTATGAGCAGT # Right flank : CCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //