Array 1 88200-89447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKV01000013.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N48700 N48700_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88200 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 88261 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 88322 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 88383 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 88444 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 88505 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 88566 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 88627 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 88688 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 88749 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 88810 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 88871 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 88932 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 88993 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 89054 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 89115 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 89176 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 89237 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 89298 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 89359 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 89420 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106210-107154 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKV01000013.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N48700 N48700_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106210 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 106271 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 106332 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 106393 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 106454 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 106515 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 106576 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 106637 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 106698 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 106759 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 106820 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 106881 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 106942 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 107003 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 107064 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 107125 29 96.6 0 ............T................ | A [107152] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //