Array 1 371974-370326 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAY01000005.1 Aliivibrio fischeri strain lpeal.1.1 L._peal_1.1.4336_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 371973 28 100.0 32 ............................ GTTAATATCAAAGGCTTTAACACCTTGACTTC 371913 28 100.0 32 ............................ GATAAAAATATCAGTATTATCAATGGTCGGAA 371853 28 100.0 32 ............................ AGTAAAAGTGACTCCATTAATAAATACATAAT 371793 28 100.0 32 ............................ AATTATGGCTGTATAGAAAATGTTGATTTATC 371733 28 100.0 32 ............................ TGAAATTTATGTTACTGATTGCATCGCATTTA 371673 28 100.0 32 ............................ ATTGGAGCATTAACACCAACATAAAAAGAAAC 371613 28 100.0 32 ............................ TCAATAGACTTGGGGCGCGCTATTGTTTCTGT 371553 28 100.0 32 ............................ TCTAATAACATGCCGCTTAACTGCGGTTTTTC 371493 28 100.0 32 ............................ GTCCCTAAAAATATATCTTTAATGAAATCAGC 371433 28 100.0 32 ............................ AAACTTCCCGATGACTGGATTGAACCATTTAC 371373 28 100.0 32 ............................ AATCAAGCCCGTTAGAAAAGTCAAAGGCGTTG 371313 28 100.0 32 ............................ ATCCATAATTGGACTAGCGAAAAAGCTATTTC 371253 28 100.0 32 ............................ TTTTAAGATCGCTGTTCTTGCTAGTTTTCCTT 371193 28 100.0 32 ............................ TTTGATAGTGACTTCTTTGCCCCAAGTCTCTT 371133 28 100.0 32 ............................ GTGATCCTAAACACTTTGAAGTTTACCCATCA 371073 28 100.0 32 ............................ TAGATGGGAAGCGTTAGGGAATGATAGTTACG 371013 28 100.0 32 ............................ AGAAGTTAGGGCATTAGCTGGCGAAATGGTGG 370953 28 100.0 32 ............................ TTCATAAAGAGTTCCGAACGTTCCAACACCAT 370893 28 100.0 32 ............................ GATGTCGAATACAAATATGCGCAGAACTATTG 370833 28 100.0 32 ............................ TTTCTAACAATCTCATCAGTAACTTGTGGATC 370773 28 100.0 32 ............................ GACCAGCGTACAAGTGGAAAATTCACCATTCC 370713 28 100.0 32 ............................ TATTTCAGCATCATCAGGCGCACAAGTAACAG 370653 28 100.0 32 ............................ GTTTTAAATTTGAATCTTCTCTTATCATCATT 370593 28 100.0 32 ............................ TACGGCTTAATTTGGCTAGTTTTGAGGCTATG 370533 28 100.0 32 ............................ TGTGATATTTATAAAATAAGCGCTTTTTTTAT 370473 28 100.0 32 ............................ ATTTCTAAATTAGCGTCATAAACCTTCGCAAT 370413 28 100.0 32 ............................ CGACAAGGAGGCGATCTGGCTATTAGAGCTTG 370353 28 75.0 0 ..........AT........A..TT.CT | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGATTTGAATGGTGTAAGCTGGTTAGGTGGGCTTATTGGCTATTGTAACGTTAGTGAAATTACAGTGGTACCTAGTTCGTGTGAATATCGTATTATTTCACGAATTCAAAGCACCATGTCGCAATCTAAGCTTAAACGATTAATAAAACGTGGTTCAATCAGTGAAGAAGAGGAGAAAACTTATAAAGCTAAAATGTTTAGCAAAGGGCTCGATAATCCCTACTTAGAATTAGAAAGCAGTTCTAATGGATATAAGCATAGACGTTATTTACGATTTAGTGCGCCACAAAGTGAGCCGATACAAGGTAAGTTTGATCAGTTTGGTTTGAGTAAGTCAGCTACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAAAATTAGGTAAAAATGGGTATTTTTGCTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTCTT # Right flank : TGCTAGGTTTTATAAATTGCTATTAGTTGAGGAATTATTGTTTGAGAAGAGAAAGTTTCTTGAATGGTGTGTTGTGCATTTTTCTGAATATTTTTAGCTTGAGATGACGGTAAGTTTACCCAATTTTTTATTGCTGTAGGTAGAGCATCAGGATTAACTATCCATCCATTTTCATTATTACAGATGAGTGTCGACATATTTCCTACGGGGGTTGAGATAACGGGAATACCTCGTCCCATGGCTTCTAATGCAACCATAGGTAAACCTTCATAGCGAGAGCAAATAACAAGTAATCCAATGTGTGGCCATATGGCATCCATTGAGTTTTGATGTCCGTGAAAATGAAGATTGGAAGGTGAGTTGTTTTGTAAGTCTTTTTCCATTGGACCTGAGCCATAAAAATGAAACTGTACTTTAGATAGTTGATTGGCTAATTCAAGGAAACGATCAGGGGCTTTTTCATGACTTAGGCGTCCAACAAATGCTATTTGGGTACCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //