Array 1 37420-39584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOI01000050.1 Vibrio cholerae strain 920008-15 50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37420 28 100.0 33 ............................ CCACGGCCACCTTACGTAAAGCTTCGCTTATCT 37481 28 100.0 33 ............................ CCAGCTTGTTGTTGAACCAGGTGTACTCTTCAT 37542 28 100.0 33 ............................ TGCTGTTGGCCGCATCGCCAGTGATGCAGGTGC 37603 28 100.0 33 ............................ TCAGCAGGATCTGCTCTAGGGTTTCTTGGTCTT 37664 28 100.0 33 ............................ CACCCCAGCTTTCCCGATCAACCCCTCCGGCAA 37725 28 100.0 33 ............................ TGAATGCCCTTTTGATACCAGTGATTTTGATAG 37786 28 100.0 33 ............................ CTTCATTAAACTGGTGCTTGGTAACTATGACTC 37847 28 100.0 33 ............................ TTTTTGGATATTAAATTTCATTGGTTAACCCTT 37908 28 100.0 33 ............................ TGTTTCACGCTTAGAGTCCTGTATAGCCCCAAA 37969 28 100.0 33 ............................ CGAAAAACCCCGTCGGTCGGCAAACTCAAACGG 38030 28 100.0 33 ............................ TGGCGTGTGTTAGGACATTCTCTCCGCCATTAT 38091 28 100.0 33 ............................ CTTTCTAGCGTTGGTAATTTCTTGCTCTAATAT 38152 28 100.0 33 ............................ CTTTCTAGCGTTGGTAATTTCTTGCTCTAATAT 38213 28 100.0 33 ............................ CTTGGAGACAGCAGAGCGGCACGGTATTTCGGT 38274 28 100.0 33 ............................ TGATGTGCTGATGGCAGAGCGCGTGCGCGAAAT 38335 28 100.0 33 ............................ GATTAATCAATCTAATTTCTGGAGATGAGGGAT 38396 28 100.0 33 ............................ TCTTCGCATTTTCTTGAGCCGCTGTAAGACAGC 38457 28 100.0 33 ............................ TAAACCCAAAGCTACTGTAGAGTGCCTTAAATG 38518 28 100.0 33 ............................ CAAGAAGGGATCAAAGCCTTTCGTTTCTTCTGG 38579 28 100.0 33 ............................ CAAAAACGATGCTGTAAATTGCGTGGAACCTGC 38640 28 100.0 34 ............................ CGGGGGCTATTAAAAATGTCAGTAGCAAAGCCAA 38702 28 100.0 33 ............................ CTTCACATTGTCGCTTTCCGTCCTTTAGCAGCT 38763 28 100.0 33 ............................ CGTAGTAAAGCTGAGAGCCGTGTTTGGCTTCCC 38824 28 100.0 33 ............................ TAACAACGATCGCACTGTCAGCTTTAAGACTGG 38885 28 100.0 33 ............................ TTTAACGGCCAGAACGTGCCTGAGTTAGCGATC 38946 28 100.0 33 ............................ TTCGGAGATTCAGAGAATGCCTATCGCAATCCC 39007 28 100.0 33 ............................ TGGAAGAGCGTGATCTGCACTACGCGGCGCAGT 39068 28 100.0 33 ............................ CCGCATCAGCCAAAGCGTAGACGTGGAGATTGA 39129 28 100.0 33 ............................ CAAGCTCATGTATGATAGCGGCCTTGGTTGCTG 39190 28 100.0 33 ............................ CCGGTGCTCAGCGCATCGGCTTGCTGGCAGGTT 39251 28 100.0 33 ............................ TTCAAAAAGCTTATCGGAGTAGTCAGACACAGT 39312 28 100.0 33 ............................ CCACTCTTATCCGAGAGTGATTCGAGCATTTCT 39373 28 100.0 33 ............................ CACGGTATTGAGTCAAGTAAGTTGATTGCAGTG 39434 28 100.0 33 ............................ TCCAAGCTTTGCGGATTGGCAAGCAAGTCATCA 39495 28 100.0 34 ............................ TCTTTAAAAGAAGGGAGCAGATCCTCGATCATTG 39557 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 36 28 100.0 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CTTTGTGGGTGCAACGTCTGAGTACGCTTGGTTTGTCTTCCCCACGCAGGTTGGATTACAGAGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTATTACAGGGTTATTGGGTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTTAGGCACTTGGATAAACATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTTTTGGGTTGGGTGAAACAGGGCAGGCCTCATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATCGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCCAAACCAGAGGGGATTTGTGACAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //