Array 1 2055897-2057421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072040.1 Akkermansia muciniphila strain Akk1376 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2055897 31 100.0 34 ............................... CAAAAGATACCAAAAGAATCCAAAAGAATACAAA 2055962 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 2056027 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 2056091 31 100.0 34 ............................... CTCACAAAAATCCCTGTATGAACCGCAATCTGAT 2056156 31 100.0 34 ............................... GATATCTTGCCCTGGGACGTTAAACCCGCCCTTG 2056221 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 2056286 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 2056351 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 2056416 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 2056481 31 100.0 34 ............................... GTTGGCGTAAGTGAAATACCTTGCCCCCGCACCG 2056546 31 100.0 34 ............................... GGCGGGGGTTAGATAGTAGCGGTGGACGAAAAAC 2056611 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 2056676 31 100.0 34 ............................... TGCCTCTGCGTCAGCTCATTGACGTCAAACTTAA 2056741 31 100.0 34 ............................... CGGAGGGTCAGCTAGCTTCACCTGCAACGGAATC 2056806 31 100.0 34 ............................... CCGCGTGATTGTTAGGCAGGACTTACAAAGTTAA 2056871 31 100.0 34 ............................... CGGGGACGGGGTAGTGGACGATATTACCGCCCTT 2056936 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 2057000 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 2057065 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 2057131 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 2057196 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 2057261 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 2057326 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2057391 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2597771-2595591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072040.1 Akkermansia muciniphila strain Akk1376 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2597770 33 100.0 34 ................................. ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 2597703 33 100.0 34 ................................. CTCTCTAAAAACCAACGGGTTACGATTGTGTCAT 2597636 33 100.0 35 ................................. CGCCGTTATCTATCCCACCGGGGAACTAGTGACAA 2597568 33 100.0 34 ................................. CGGTGTTCCAGGCGTCTTCCAGCGCCTCGATATG 2597501 33 100.0 34 ................................. ATCAAAGGGAGGAAAGCTCCTAAGAGAAAAAACA 2597434 33 100.0 34 ................................. AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 2597367 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2597300 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 2597233 33 100.0 34 ................................. TGTGCCGTTGCCGGACCCTCGGAAATAGTCATCA 2597166 33 100.0 35 ................................. CCCCGCAACAATAAACTAAAAGAAAGGAAAACTAA 2597098 33 100.0 34 ................................. CACTTTGACGTTGCCCCCGCCCTTGAGGATTTGG 2597031 33 100.0 34 ................................. ACCCTTTAAGAATTAGGAACTTACGATTGTGTCA 2596964 33 100.0 34 ................................. TAGACGCTGAATAACTACGCCGCCCTATAAAACC 2596897 33 100.0 34 ................................. CCCGGACTTTTACGAGGATGCGGGCCTGTATGCT 2596830 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 2596763 33 100.0 33 ................................. TCTTCGATGGCGCGGGCGAGAGCCCGCCATGCC 2596697 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 2596630 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 2596564 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 2596497 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 2596430 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 2596363 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 2596296 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 2596230 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 2596163 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 2596096 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 2596026 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 2595960 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 2595893 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 2595826 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 2595759 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 2595692 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2595669] 2595623 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //