Array 1 28665-27536 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVO01000020.1 Salmonella enterica strain CFSAN071992 CFSAN071992_S18_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28664 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 28603 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 28541 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 28480 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 28419 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 28358 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 28297 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 28236 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 28175 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 28114 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 28053 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 27992 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 27931 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 27870 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 27809 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 27748 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 27687 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 27626 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27565 29 89.7 0 A...........TC............... | A [27538] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 260922-261925 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVO01000006.1 Salmonella enterica strain CFSAN071992 CFSAN071992_S18_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260922 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 260983 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 261044 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 261105 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 261166 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 261227 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 261288 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 261349 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 261410 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 261471 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 261532 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 261593 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 261654 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 261715 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 261776 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 261837 29 96.6 32 ............T................ CGTTCATCGGCAGCGTCACGCAATATGAAGAT 261898 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //