Array 1 6261-7509 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJG01000008.1 Escherichia coli strain sc13-121 NODE_8_length_132410_cov_126.318, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6261 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 6322 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 6383 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6444 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6505 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6566 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6627 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 6688 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 6749 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 6810 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 6871 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 6932 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 6993 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 7054 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 7115 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 7176 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7237 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 7298 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 7359 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 7420 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7481 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84236-85710 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJG01000015.1 Escherichia coli strain sc13-121 NODE_15_length_102549_cov_138.489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84236 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84297 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84358 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84419 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84480 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84541 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84602 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84663 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84724 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84785 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84846 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84870] Deletion [84887] 84888 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84949 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85010 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85071 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85132 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85193 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85254 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85315 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85376 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85437 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85498 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85560 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85621 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85682 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //