Array 1 242906-241297 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFE01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1768 1768_2_length_693828_cov_58.1756, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242905 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 242844 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242783 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242722 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 242649 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242588 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242527 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242466 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242405 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242344 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242283 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242222 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242161 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242100 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242039 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241978 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241917 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241856 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241753 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241692 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241631 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241570 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241509 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241448 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241387 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241326 29 96.6 0 A............................ | A [241299] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260290-259164 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFE01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1768 1768_2_length_693828_cov_58.1756, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260289 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260228 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260167 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260106 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260045 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259984 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259923 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 259862 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 259801 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259740 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259679 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259618 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259557 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259435 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259374 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259313 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259252 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259191 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //